Cho-Yi (Joey) Chen = Olympic Swimmer + Bioinformatician & Biomedical Data Scientist

Education & Training

• 2015-2017:
  美國哈佛大學 達納法伯癌症研究中心 博士後研究員
  Postdoctoral Research Fellow, Dana-Farber Cancer Institute (DFCI), Harvard University
• 2014:
  美國匹茲堡大學 生物統計學系訪問學者
  Predoctoral Visiting Scholar, Department of Biostatistics, University of Pittsburgh (UPitt)
• 2010-2015:
  國立臺灣大學 暨 中央研究院 基因體與系統生物學學位學程 博士
  Ph.D., Joint Degree Program in Genome and Systems Biology, National Taiwan University (NTU) & Academia Sinica
• 2007-2009:
  國立臺灣大學 電機資訊學院 生醫電子與資訊學研究所 碩士
  M.S., Institute of Biomedical Electronics and Bioinformatics (BEBI), National Taiwan University (NTU)
• 2003-2007:
  國立臺灣大學 電機資訊學院 資訊工程學系 學士
  B.S., Department of Computer Science and Information Engineering (CSIE), National Taiwan University (NTU)

Research Interests

• 生物資訊與計算生物學 Bioinformatics & Computational Biology
• 基因體與系統生物學 Genomics & Systems Biology
• 生醫資料科學 Biomedical Data Science
• 競技游泳 Competitive Swimming

Experiences

Work

• 2017-present:
  國立陽明大學 生物醫學資訊研究所 助理教授
  Assistant Professor, Institute of Biomedical Informatics, National Yang-Ming University

Teaching

• 生物資訊程式設計（國立陽明大學）
  Bioinformatics Programming, Instructor (NYMU)
  2011 Summer | 2012 Summer | 2013 Summer
• 生物資訊學實習（國立臺灣大學）
  Bioinformatics Laboratory, TA (NTU)
  2012 Spring | 2013 Spring

Academic Society

• 台灣演化與計算生物學會．創社會員
  Founding member, Taiwan Society of Evolution and Computational Biology (TaiwanSECB)

Reviewer/Referee

Conference

• GIW/BIOINFO 2017, the 28th International Conference on Genome Informatics
• APBC 2017, the 15th Asia Pacific Bioinformatics Conference
• GIW 2013, the 24th International Conference on Genome Informatics

Journal

• Bioinformatics, Oxford Journals
• Nucleic Acids Research, Oxford Journals
• PLoS ONE, the Public Library of Science
• Scientific Reports, Nature Publishing Group
• Transactions on Knowledge and Data Engineering, IEEE Computer Society

Book

• Bioinformatics with Python Cookbook, Packt Publishing Ltd.

Conference

• 2015年新興資訊科技青年學人研討會．美國麻州劍橋 （口頭發表）
  EITA 2015 (Oral Presentation)
  The 4th EITA Young Investigator Conference, Cambridge, MA, USA.
• 第15屆國際系統生物學會議．澳大利亞墨爾本（海報發表．大會旅行獎助）
  ICSB 2014 (Poster Presentation; Student Travel Fellowship)
  The 15th International Conference on Systems Biology, Melbourne, Australia.
• 2014年新興資訊科技研討會：新媒體與生醫研究．美國麻州劍橋 （口頭發表）
  EITA 2014 (Oral Presentation)
  The 2014 EITA Conference on New Media and Biomedical Research, Cambridge, MA, USA.
• 第7屆亞洲青年學人生物資訊和生物體學會議．日本東京 （口頭發表．大會旅行獎助）
  AYRCOB 2013 (Oral Presentation; Travel Fellowship)
  The 7th Asian Young Researchers Conference on Computational and Omics Biology, Tokyo, Japan.
• 第9屆亞太生物資訊學會議．韓國仁川 （口頭發表．國科會獎助）
  APBC 2011 (Oral Presentation; NSC Sponsorship)
  The 9th Asia Pacific Bioinformatics Conference, Incheon, Korea.
• 第24/26屆生物醫學聯合學術年會．台灣台北 （口頭/海報發表）
  JACBS 2009/2011 (Oral/Poster Presentation)
  The 24th/26th Joint Annual Conference of Biomedical Science, Taipei, Taiwan.

Talk/Lecture/TV Interview

• Mar. 2017
  受邀演講：《探究老化對於人類大腦前額葉皮質基因表達晝夜節律之影響》．國立陽明大學
  Invited Talk: Effects of aging on circadian patterns of gene expression in the human prefrontal cortex
  Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan
• Feb. 2017
  受邀演講：《人類組織基因表達與調控網絡之性別差異》．國立陽明大學
  Invited Talk: Sexual dimorphism in gene expression and regulatory networks across human tissues
  Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan
• Dec. 2016
  受邀演講：《以後設分析法偵測基因共表現網路差異模組》．哈佛醫學院
  Invited Talk: Meta-analysis Framework for Differential Co-expression Network Detection
  Channing Division of Network Medicine, Harvard Medical School, Boston, USA
• May 2016
  受邀演講：《分子生物多體學網路整合分析》．哈佛醫學院
  Invited Talk: Multi-omic Network-based Analyses of GTEx Data
  Channing Division of Network Medicine, Harvard Medical School, Boston, USA
• Dec. 2014
  受邀授課：《癌症基因體體細胞突變組合分析》．台北醫學大學
  Invited Lecture: Analyzing Combinations of Somatic Mutations in Cancer Genomes
  Ph.D. Program for Cancer Biology and Drug Discovery, Taipei Medical University, Taipei, Taiwan.
• Nov. 2014
  受邀演講：《3端非轉錄體與微核醣核酸重編程之探索》．德國馬克斯普朗克學會
  Invited Talk: Exploring the Programming of 3'UTRome and MicroRNA Regulatory Network
  Max Planck Institute for the Physics of Complex Systems (MPI-PKS), Dresden, Germany.
• May 2013
  受邀授課：《癌症生物學之微核醣核酸研究：資料庫與工具》．國立台灣大學
  Invited Lecture: MicroRNA Research in Cancer Biology: Databases and Tools
  Department of Life Science, National Taiwan University, Taipei, Taiwan.
• Nov. 2012
  受邀座談：《大專院校運動績優生生涯規劃與挑戰》．國立台灣大學
  Invited Talk: Student-Athlete Success: Meeting the Challenges of College Life
  Physical Education Office, National Taiwan University, Taipei, Taiwan.
• Mar. 2012
  受邀授課：《基因類別富集分析方法》．國立台灣大學
  Invited Lecture: Gene Category Over-representation Analysis
  Department of Life Science, National Taiwan University, Taipei, Taiwan.
• Dec. 2011
  電視訪問．台灣公共電視
  TV Interview, TAIWAN PUBLIC TV, Taiwan.
• Jan. 2011
  受邀授課：《轉錄因子與微核醣糖核酸於人類調控網路之共調控預測》．國立台灣大學
  Invited Lecture: Coregulation of Transcription Factors and MicroRNAs in Human Transcriptional Regulatory Network
  Department of Life Science, National Taiwan University, Taipei, Taiwan.
• May. 2009
  電視訪問．台灣民視
  TV Interview, FORMOSA TV, Taiwan.

Team & Club

• 2003~2009, 2010~2013: 
  國立臺灣大學游泳代表隊隊員
  Member of NTU Swimming Team
• 2007~2008: 
  國立臺灣大學游泳代表隊隊長
  Captain of NTU Swimming Team
• 1994~2013: 
  基隆市游泳代表隊隊員
  Member of Keelung Swimming Club
• 2010~2012: 
  Speedo® 臺灣區運動員代言人
  Athlete Endorser of Speedo® Taiwan
• 2005~2006: 
  Mizuno Swim® 臺灣區契約選手
  Sponsored Athlete of Mizuno Swim® Taiwan
• 2001~2004:
  Arena® 臺灣區贊助選手
  Sponsored Athlete of Arena® Taiwan

Sports Competition

• 2011年短水道世界盃新加坡分站
  FINA/ARENA Swimming World Cup 2011, Singapore
  50公尺蛙式：決賽第8名
  50m Breaststroke, finalist
• 2010年杜拜世界游泳短水道錦標賽
  10th FINA Short Course World Swimming Championships, Dubai, United Arab Emirates, 2010
  50公尺蛙式：總排名第45名（參賽人數92名）
  50m Breaststroke, overall ranking: 45 / 92
• 2010年廣州亞運會
  16th Asian Games, Guangzhou, China, 2010
  50公尺蛙式：總排名第16名（參賽人數34名）
  50m Breaststroke, overall ranking: 16 / 34
• 2004年雅典奧運會
  28th Olympic Games, ATHENS, Greece, 2004
  100公尺蛙式：總排名第35名（參賽人數60名）
  100m Breaststroke, overall ranking: 35 / 60
• 2002年釜山亞運會
  14th Asian Games, BUSAN, South Korea, 2002
  100公尺蛙式：總排名第4名
  100m Breaststroke, overall ranking: 4
• 2002年法國世界中學生運動會
  ISF World Gymnasiade, CAEN, France, 2002
  (34 countries with 2000 high school athletes)
  100公尺蛙式：金牌
  Won gold in the 100m breaststroke
  200公尺蛙式：金牌
  Won gold in the 200m breaststroke
• 2002年莫斯科世界游泳短水道錦標賽
  6th FINA Short Course World Swimming Championships, MOSCOW, Russia, 2002
  100公尺蛙式：總排名第35名（參賽人數59名）
  100m Breaststroke, overall ranking: 35 / 59
  200公尺蛙式：總排名第23名（參賽人數41名）
  200m Breaststroke, overall ranking: 23 / 41
• 2001年福岡世界游泳錦標賽
  9th FINA World Swimming Championships, FUKUOKA, Japan, 2001
  100公尺蛙式：總排名第39名（參賽人數62名）
  100m Breaststroke, overall ranking: 39 / 62
  200公尺蛙式：總排名第27名（參賽人數40名）
  200m Breaststroke, overall ranking: 27 / 40
• 2001年大阪東亞運
  3rd East Asian Games, OSAKA, Japan, 2001
  200公尺蛙式：決賽第4名
  Finished 4th in the final of the 200m breaststroke
• 2000年雪梨奧運選拔賽
  2000 Olympic Trials, KAOHSIUNG, Taiwan, 2000
  200公尺蛙式：通過奧運參賽標準B
  Qualified for Olympic athlete candidate in 200m breaststroke B standard

Career Records

• 前任200公尺蛙式全國紀錄保持：2001/4 ~ 2005/6
  Former 200m Breaststroke National Record holder in Taiwan
• 前任50公尺蛙式全國短水道紀錄保持：2009/12 ~ 2009/12
  Former 50m Breaststroke Short Course National Record holder in Taiwan
• 前任200公尺蛙式全國短水道紀錄保持：2001/12 ~ 2004/12
  Former 200m Breaststroke Short Course National Record holder in Taiwan
• 現任4x100公尺混合式接力全國短水道紀錄保持：2010/12 ~ now
  Current 4x100m Medley Relay Short Course National Record holder in Taiwan
• 前任200公尺蛙式全國運動會大會紀錄保持：2001/10 ~ 2005/10
  Former 200m Breaststroke Meet Record holder of National Athletic Games in Taiwan
• 前任200公尺蛙式全國中等學校運動會大會紀錄保持：2001/4 ~ 2013/4
  Current 200m Breaststroke Meet Record holder of National High School Athletic Games in Taiwan
• 前任200公尺蛙式亞洲分齡紀錄保持（18歲以上組）：2003/8 ~ 2007/8
  Former 200m Breaststroke Asian Age Group Record holder (above 18)
• 前任200公尺蛙式亞洲分齡紀錄保持（15-17歲組）：2002/8 ~ 2009/8
  Former 200m Breaststroke Asian Age Group Record holder (U18)
• 前任100公尺蛙式亞洲分齡紀錄保持（15-17歲組）：2002/8 ~ 2009/8
  Former 100m Breaststroke Asian Age Group Record holder (U18)
• 前任50 公尺蛙式亞洲分齡紀錄保持（15-17歲組）：2002/8 ~ 2009/8
  Former 50m Breaststroke Asian Age Group Record holder (U18)
• 前任200公尺蛙式亞洲分齡紀錄保持（13-14歲組）：2000/8 ~ 2002/8
  Former 200m Breaststroke Asian Age Group Record holder (U15)

Awards & Honors

• 第15屆國際系統生物學會議學生旅行獎學金
  Student Travel Fellowship, the 15th International Conference on Systems Biology (ICSB 2014)
• 國科會公費補助赴國外研究
  Study Abroad Grant, National Science Council, Taiwan
• 第七屆亞洲青年學人計算生物組學會議旅行獎學金
  Travel Fellowship, the 7th Asian Young Researchers Conference on Computational and Omics Biology (AYRCOB 2013)
• 一百年全國大專校院運動會運動精神獎
  Sportsmanship Award Winner in 2011 National Intercollegiate Athletic Games (3 winners per year among 9,200 athletes from 164 colleges in Taiwan)
• 國科會出席國際學術會議全額補助
  Full Sponsorship for Attending International Conference, National Science Council, Taiwan (NSC-100-2922-I-002-025)
• 國立臺灣大學生醫電子與資訊學研究所碩士班第一名畢業
  Graduated summa cum laude from NTU BEBI
• 九十六年大專優秀青年
  2007 Outstanding College Youth of the Republic of China
• 九十六年國立臺灣大學優秀青年楷模
  2007 National Taiwan University Outstanding College Youth (15 winners per year from 32,791 NTU students)
• 國立臺灣大學資訊工程學系第七名畢業
  Ranked 7th among 108 graduates in NTU CSIE (top 6%) (GPA 3.94)
• 三屆國立臺灣大學書卷獎
  Three-time Presidential Award Winnner (top 5%) in Dept. of Computer Science and Information Engineering of National Taiwan University (NTU CSIE)
• 九十五年國立臺灣大學傑出表現獎
  2006 National Taiwan University Scholarship for Outstanding Performance (15 winners per year from 32,233 NTU students)
• 九十四年中華嘉新體育獎學金(大專組)
  2005 Chinese Chia-Hsin Sports Scholarship (College Group)
• 美國大學委員會學術評估測試(SAT)數理科滿分(800)
  Earned a full score (800) on SAT Reasoning Test, Mathematics
• 中華民國國光體育獎章
  Guo Guang Sports Medal recipient decorated by the President of the Republic of China (athletes' most prestigious award in Taiwan)
• 九十三年基隆市傑出運動員
  2004 Outstanding Athlete of Keelung City
• 九十二年中華嘉新體育獎學金(高中組)
  2003 Chinese Chia-Hsin Sports Scholarship (High School Group)
• 九十二年基隆市中等學校優秀青年代表
  2003 Outstanding High School Youth of Keelung City
• 九十年基隆市十大傑出運動員
  2001 Top-Ten Outstanding Athlete of Keelung City
• 八十九年末代聯招省聯基隆區榜首
  Ranked 1st in Joint High School Entrance Exam of year 2000 in Taiwan (Area of Keelung City)
• 八十九年基隆市中等學校優秀青年代表
  2000 Outstanding High School Youth of Keelung City