Publications

2015
AlQuraishi M, Tang S, Xia X. An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system. BMC Bioinformatics [Internet]. 2015;16 (390). Website
2014
AlQuraishi M, Koytiger G, Jenney A, Macbeath G, Sorger PK. A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks. Nature Genetics [Internet]. 2014;46 (12) :1363-1371. Full Text
2013
AlQuraishi M, McAdams H. Three enhancements to the inference of statistical protein-DNA potentials. Proteins [Internet]. 2013;81 (3) :426-442. Full Text
2012
AlQuraishi M. Non-parametric energy potentials: a compressed sensing approach. Stanford University. 2012.
2011
AlQuraishi M, McAdams H. Direct inference of protein-DNA interactions using compressed sensing methods. PNAS [Internet]. 2011;108 (36) :14819-14824. Full Text (PNAS Website) Full Text.pdf