Bioagents

A collection of agents for biological reasoning in a communication system. The following agents are currently available:

  • MRA (Mechanistic Reasoning Agent): The MRA uses INDRA to construct mechanistic models of biochemical systems from user input, publications and databases. It can also propose changes to model structure autonomously.
  • TRA (Temporal Reasoning Agent): The TRA executes dynamical models built by the MRA under variable experimental conditions and verifies whether the dynamics meets a given temporal pattern
  • DTDA (Disease, Target and Drug Agent): The DTDA's task is to search for targets known to be implicated in a disease and to look for drugs that are known to affect that target.