I am a research associate at Harvard University, working with Prof. Bill Hanage in the Center for Communicable Disease Dynamics at Harvard Chan School and Prof. Michael Baym in the Department of Biomedical Informatics at Harvard Medical School. My research lies at the intersection of computer science, mathematics, biology and epidemiology – I develop methods for rapid prediction of antibiotic resistance from point-of-care sequencing data obtained by mobile sequencing technologies.

My research involves software development. I am the lead developer of RASEProPhyleOcoco, RNFtools, SAMsiftProphAsmDyMas and Disty McMatrixFace. I also participated in the development of Blind Friendly MapsProPhex, Seed-KrakenSeed-Jellyfish and NanoSim-H, and occasionally contribute to large projects such as Bioconda or Snakemake.

Prior to joining Harvard, I received my Ph.D. in computer science at Université Paris-Est and a master degree in mathematical computer science at the Czech Technical University in Prague.