Publications

2020
Wu X, Nethery RC, Sabath BM, Braun D, Dominici F. Exposure to air pollution and COVID-19 mortality in the United States. medRxiv. 2020.
Yin K, Liu Y, Lamichhane B, Sandbach JF, Patel G, Compagnoni G, Kanak RH, Rosen B, Ondrula DP, Smith L, et al. Legacy Genetic Testing Results for Cancer Susceptibility: How Common are Conflicting Classifications in a Large Variant Dataset from Multiple Practices?. Annals of Surgical Oncology. 2020.
Gao F, Pan X, Dodd-Eaton EB, Recio CVC, Bojadzieva J, Mai PL, Zelley K, Johnson VE, Braun D, Nichols KE, et al. A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome. bioRxiv. 2020.
Chen J, Bae E, Zhang L, Hughes K, Parmigiani G, Braun D, Rebbeck TR. Penetrance of Breast and Ovarian Cancer in Women Who Carry a BRCA1/2 Mutation and Do not Use Risk-Reducing Salpingo-Oophorectomy: An Updated Meta-analysis. JNCI Cancer Spectrum. 2020.
Wang C, Wang Y, Hughes KS, Parmigiani G, Braun D. Penetrance of Colorectal Cancer Among Mismatch Repair Gene Mutation Carriers: A Meta-Analysis. JNCI Cancer Spectrum. 2020.
2019
Liu Y, Yin K, Lamichhane B, Sandbach JF, Patel G, Compagnoni G, Kanak RH, Rosen B, Ondrula DP, Smith L, et al. Ask2Me VarHarmonizer: A Python-Based Tool to Harmonize Variants from Cancer Genetic Testing Reports and Map them to the ClinVar Database. arXiv preprint arXiv:1911.08408. 2019.
McCarthy AM, Guan Z, Welch M, Griffin ME, Sippo DA, Deng Z, Coopey SB, Acar A, Semine A, Parmigiani G, et al. Performance of breast cancer risk assessment models in a large mammography cohort. JNCI: Journal of the National Cancer Institute. 2019.
Bao Y, Deng Z, Wang Y, Kim H, Armengol VD, Acevedo F, Ouardaoui N, Wang C, Parmigiani G, Barzilay R, et al. Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes. JCO Clinical Cancer Informatics, forthcoming. 2019.
Kim J, Braun D, Ukaegbu C, Dhingra TG, Kastrinos F, Parmigiani G, Syngal S, Yurgelun MB. Clinical Factors Associated With Gastric Cancer in Individuals With Lynch Syndrome. Clinical Gastroenterology and Hepatology. 2019.
Choirat C, Braun D, Kioumourtzoglou M-A. Data Science in Environmental Health Research. Current Epidemiology Reports. 2019;6 (3) :291–299.
Acevedo F, Armengol VD, Deng Z, Tang R, Coopey S, Mazzola E, Lanahan C, Braun D, Yala A, Barzilay R, et al. Incidental atypical hyperplasia/LCIS in mammoplasty specimens and subsequent risk of breast cancer. 2019.
Papadogeorgou G, Kioumourtzoglou M-A, Braun D, Zanobetti A. Low Levels of Air Pollution and Health: Effect Estimates, Methodological Challenges, and Future Directions. Current environmental health reports. 2019 :1–11.
Deng Z, Yin K, Bao Y, Armengol VD, Wang C, Tiwari A, Barzilay R, Parmigiani G, Braun D, Hughes KS. Validation of a Semiautomated Natural Language Processing–Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance. JCO Clinical Cancer Informatics. 2019.
2018
Acevedo F, Armengol DV, Deng Z, Tang R, Coopey SB, Braun D, Yala A, Barzilay R, Li C, Colwell A, et al. Pathologic findings in reduction mammoplasty specimens: a surrogate for the population prevalence of breast cancer and high-risk lesions. Breast Cancer Research and Treatment. 2018 :1–7.
Sabath BM, Di Q, Braun D, Schwartz J, Dominici F, Choirat C. Airpred: A Flexible R Package Implementing Methods for Predicting Air Pollution, in 2018 IEEE 5th International Conference on Data Science and Advanced Analytics (DSAA). IEEE ; 2018 :577–583.
Wu X, Braun D, Kioumourtzoglou M-A, Choirat C, Di Q, Dominici F. Causal inference in the context of an error prone exposure: air pollution and mortality. Annals of Applied Statistics, Accepted. 2018.
Madsen T, Braun D, Peng G, Parmigiani G, Trippa L. Efficient computation of the joint probability of multiple inherited risk alleles from pedigree data. Genetic Epidemiology. 2018.
Braun D, Yang J, Griffin M, Parmigiani G, Hughes KS. A Clinical Decision Support Tool to Predict Cancer Risk for Commonly Tested Cancer-Related Germline Mutations. Journal of genetic counseling. 2018 :1–13.
2017
Pencina MJ, Chipman J, Steyerberg EW, Braun D, Fine JP, D'Agostino RB. Authors' response to comments. Statistics in medicine. 2017;36 (28) :4511–4513.
Cintolo-Gonzalez JA, Braun D, Blackford AL, Mazzola E, Acar A, Plichta JK, Griffin M, Hughes KS. Breast cancer risk models: a comprehensive overview of existing models, validation, and clinical applications. Breast Cancer Research and Treatment. 2017 :1–22.

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