Publications

2019
McCarthy AM, Guan Z, Welch M, Griffin ME, Sippo DA, Deng Z, Coopey SB, Acar A, Semine A, Parmigiani G, et al. Performance of breast cancer risk assessment models in a large mammography cohort. JNCI: Journal of the National Cancer Institute. 2019.
Bao Y, Deng Z, Wang Y, Kim H, Armengol VD, Acevedo F, Ouardaoui N, Wang C, Parmigiani G, Barzilay R, et al. Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes. JCO Clinical Cancer Informatics, forthcoming. 2019.
Kim J, Braun D, Ukaegbu C, Dhingra TG, Kastrinos F, Parmigiani G, Syngal S, Yurgelun MB. Clinical Factors Associated With Gastric Cancer in Individuals With Lynch Syndrome. Clinical Gastroenterology and Hepatology. 2019.
Choirat C, Braun D, Kioumourtzoglou M-A. Data Science in Environmental Health Research. Current Epidemiology Reports. 2019;6 (3) :291–299.
Acevedo F, Armengol VD, Deng Z, Tang R, Coopey S, Mazzola E, Lanahan C, Braun D, Yala A, Barzilay R, et al. Incidental atypical hyperplasia/LCIS in mammoplasty specimens and subsequent risk of breast cancer. 2019.
Papadogeorgou G, Kioumourtzoglou M-A, Braun D, Zanobetti A. Low Levels of Air Pollution and Health: Effect Estimates, Methodological Challenges, and Future Directions. Current environmental health reports. 2019 :1–11.
Deng Z, Yin K, Bao Y, Armengol VD, Wang C, Tiwari A, Barzilay R, Parmigiani G, Braun D, Hughes KS. Validation of a Semiautomated Natural Language Processing–Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance. JCO Clinical Cancer Informatics. 2019.
2018
Acevedo F, Armengol DV, Deng Z, Tang R, Coopey SB, Braun D, Yala A, Barzilay R, Li C, Colwell A, et al. Pathologic findings in reduction mammoplasty specimens: a surrogate for the population prevalence of breast cancer and high-risk lesions. Breast Cancer Research and Treatment. 2018 :1–7.
Sabath BM, Di Q, Braun D, Schwartz J, Dominici F, Choirat C. Airpred: A Flexible R Package Implementing Methods for Predicting Air Pollution, in 2018 IEEE 5th International Conference on Data Science and Advanced Analytics (DSAA). IEEE ; 2018 :577–583.
Wu X, Braun D, Kioumourtzoglou M-A, Choirat C, Di Q, Dominici F. Causal inference in the context of an error prone exposure: air pollution and mortality. Annals of Applied Statistics, Accepted. 2018.
Madsen T, Braun D, Peng G, Parmigiani G, Trippa L. Efficient computation of the joint probability of multiple inherited risk alleles from pedigree data. Genetic Epidemiology. 2018.
Braun D, Yang J, Griffin M, Parmigiani G, Hughes KS. A Clinical Decision Support Tool to Predict Cancer Risk for Commonly Tested Cancer-Related Germline Mutations. Journal of genetic counseling. 2018 :1–13.
2017
Pencina MJ, Chipman J, Steyerberg EW, Braun D, Fine JP, D'Agostino RB. Authors' response to comments. Statistics in medicine. 2017;36 (28) :4511–4513.
Cintolo-Gonzalez JA, Braun D, Blackford AL, Mazzola E, Acar A, Plichta JK, Griffin M, Hughes KS. Breast cancer risk models: a comprehensive overview of existing models, validation, and clinical applications. Breast Cancer Research and Treatment. 2017 :1–22.
Braun D, Gorfine M, Katki HA, Ziogas A, Parmigiani G. Nonparametric Adjustment for Measurement Error in Time to Event Data: Application to Risk Prediction Models. Journal of the American Statistical Association. 2017;(just-accepted).
Braun D, Gorfine M, Parmigiani G, Arvold ND, Dominici F, Zigler C. Propensity scores with misclassified treatment assignment: a likelihood-based adjustment. Biostatistics. 2017;18 (4) :695–710.
Chipman J, Braun D. Simpson's paradox in the integrated discrimination improvement. Statistics in medicine. 2017;36 (28) :4468–4481.
2016
Horvitz-Lennon M, Braun D, Normand S-L. Challenges in the Use of Administrative Data for Heart Failure Services Research. Journal of cardiac failure. 2016;22 (1) :61–63.
2014
Braun D, Gorfine M, Parmigiani G. Misreported family histories and underestimation of risk. Journal of Clinical Oncology. 2014;32 (32) :3682–3683.
2011
Aebi S, Sun Z, Braun D, Price KN, Castiglione-Gertsch M, Rabaglio M, Gelber RD, Crivellari D, Lindtner J, Snyder R, et al. Differential efficacy of three cycles of CMF followed by tamoxifen in patients with ER-positive and ER-negative tumors: long-term follow up on IBCSG Trial IX. Annals of oncology. 2011;22 (9) :1981–1987.

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