Publications

Éadaoin Harney, Nick Patterson, David Reich, and John Wakeley. 2021. “Assessing the Performance of qpAdm: A Statistical Tool for Studying Population Admixture.” Genetics. Publisher's Version

Nathan Nakatsuka, Iosif Lazaridis, Chiara Barbieri, Pontus Skoglund, Nadin Rohland, Swapan Mallick, Cosimo Posth, and others. 2020. “A Paleogenomic Reconstruction of the Deep Population History of the Andes.” Cell. Publisher's Version

Nathan Nakatsuka, Éadaoin Harney, Swapan Mallick, Matthew Mah, Nick Patterson, and David Reich. 2020. “ContamLD: Estimation of Ancient Nuclear DNA Contamination Using Breakdown of Linkage Disequilibrium.” Genome Biology. Publisher's Version

Eadaoin Harney, Olivia Cheronet, Daniel Fernandes, Kendra Sirak, and others. 2020. “A Minimally Destructive Protocol for DNA Extraction from Ancient Teeth.” Genome Research. Publisher's Version

Éadaoin Harney, Ayushi Nayak, Nick Patterson, Pramod Joglekar, Veena Mushrif-Tripathy, Swapan Mallick, Nadin Rohland, Jakob Sedig, Nicole Adamski, Rebecca Bernardos, Nasreen Broomandkhoshbacht, Brendan J. Culleton, Matthew Ferry, Thomas K. Harper, Megan Michel, Jonas Oppenheimer, Kristin Stewardson, Zhao Zhang, Harashawaradhana, Maanwendra Singh Bartwal, Sachin Kumar, Subhash Chandra Diyundi, Patrick Roberts, Nicole Boivin, Douglas J. Kennett, Kumarasamy Thangaraj, David Reich, and Niraj Rai. 8/20/2019. “Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India.” Nature Communications, 10, 3670, Pp. 1-10. Publisher's Version

Chuan-Chao Wang, Sabine Reinhold Reinhold, Alexey Kalmykov, Antje Wissgott, Guido Brandt, Choongwon Jeong, Olivia Cheronet, Matthew Ferry, Eadaoin Harney, Denise Keating, and others. 2/4/2019. “Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions.” Nature Communications, 10, 590, Pp. 1-13.

Vagheesh Narasimhan, Nick Patterson, Priya Moorjani, Nadin Rohland, Rebecca Bernardos, Swapan Mallick, Iosif Lazaridis, Nathan Nakatsuka, Iñigo Olalde, Mark Lipson, and Alexander M. Kim. 2019. “The Formation of Human Populations in South and Central Asia.” Science, 365, Pp. eaat7487. Publisher's Version

Kendra Sirak, Daniel Fernandes, Olivia Cheronet, Eadaoin Harney, and others. 2019. “Human Auditory Ossicles as an Alternative Optimal Source of Ancient DNA”. BioRxiv

Éadaoin Harney, Hila May, Dina Shalem, Nadin Rohland, Swapan Mallick, Iosif Lazaridis, Rachel Sarig, Kristin Stewardson, Susanne Nordenfelt, Nick Patterson, and others. 2018. “Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation.” Nature communications, 9, 1, Pp. 3336.

Mark Lipson, Olivia Cheronet, Swapan Mallick, Nadin Rohland, Marc Oxenham, Michael Pietrusewsky, Thomas Oliver Pryce, Anna Willis, Hirofumi Matsumura, Hallie Buckley, and others. 2018. “Ancient genomes document multiple waves of migration in Southeast Asian prehistory.” Science, Pp. eaat3188.

Iñigo Olalde, Selina Brace, Morten E Allentoft, Ian Armit, Kristian Kristiansen, Thomas Booth, Nadin Rohland, Swapan Mallick, Anna Szécsényi-Nagy, Alissa Mittnik, and others. 2018. “The Beaker phenomenon and the genomic transformation of northwest Europe.” Nature, 555, 7695, Pp. 190.

Iain Mathieson, Songül Alpaslan-Roodenberg, Cosimo Posth, Anna Szécsényi-Nagy, Nadin Rohland, Swapan Mallick, Iñigo Olalde, Nasreen Broomandkhoshbacht, Francesca Candilio, Olivia Cheronet, and others. 2018. “The genomic history of southeastern Europe.” Nature, 555, 7695, Pp. 197.

Mark Lipson, Anna Szécsényi-Nagy, Swapan Mallick, Annamária Pósa, Balázs Stégmár, Victoria Keerl, Nadin Rohland, Kristin Stewardson, Matthew Ferry, Megan Michel, and others. 2017. “Parallel palaeogenomic transects reveal complex genetic history of early European farmers.” Nature, 551, 7680, Pp. 368.

Pontus Skoglund, Jessica C Thompson, Mary E Prendergast, Alissa Mittnik, Kendra Sirak, Mateja Hajdinjak, Tasneem Salie, Nadin Rohland, Swapan Mallick, Alexander Peltzer, and others. 2017. “Reconstructing prehistoric African population structure.” Cell, 171, 1, Pp. 59–71.

Iosif Lazaridis, Dani Nadel, Gary Rollefson, Deborah C Merrett, Nadin Rohland, Swapan Mallick, Daniel Fernandes, Mario Novak, Beatriz Gamarra, Kendra Sirak, and others. 2016. “Genomic insights into the origin of farming in the ancient Near East.” Nature, 536, 7617, Pp. 419.

Pontus Skoglund, Cosimo Posth, Kendra Sirak, Matthew Spriggs, Frederique Valentin, Stuart Bedford, Geoffrey R Clark, Christian Reepmeyer, Fiona Petchey, Daniel Fernandes, and others. 2016. “Genomic insights into the peopling of the Southwest Pacific.” Nature, 538, 7626, Pp. 510.

Alexander Mörseburg, Luca Pagani, Francois-Xavier Ricaut, Bryndis Yngvadottir, Eadaoin Harney, Cristina Castillo, Tom Hoogervorst, Tiago Antao, Pradiptajati Kusuma, Nicolas Brucato, and others. 2016. “Multi-layered population structure in Island Southeast Asians.” European Journal of Human Genetics, 24, 11, Pp. 1605.

Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songül Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak, and others. 2015. “Genome-wide patterns of selection in 230 ancient Eurasians.” Nature, 528, 7583, Pp. 499.

Wolfgang Haak, Iosif Lazaridis, Nick Patterson, Nadin Rohland, Swapan Mallick, Bastien Llamas, Guido Brandt, Susanne Nordenfelt, Eadaoin Harney, Kristin Stewardson, and others. 2015. “Massive migration from the steppe was a source for Indo-European languages in Europe.” Nature, 522, 7555, Pp. 207.

Nadin Rohland, Eadaoin Harney, Swapan Mallick, Susanne Nordenfelt, and David Reich. 2015. “Partial uracil–DNA–glycosylase treatment for screening of ancient DNA.” Phil. Trans. R. Soc. B, 370, 1660, Pp. 20130624.