AMICI: Advanced Multilanguage Interface to CVODES and IDAS
Python/MATLAB/C++ toolbox for efficient simulation and sensitivity computation for kinetic models
pyPESTO: python Parameter EStimation TOolbox
Python toolbox for the calibration and uncertainty analysis for kinetic models
PETab: PEtab – Specifying Parameter Estimation Problems
Data format for the definition of kinetic model estimation problems
Fides: Reliable Trust Region Optimization in Python
A python implementation of Interior Trust Region Optimization
PySB: Programmatic Rule-Based Modeling in Python
Python toolbox for rule based model formulation