Publications

2022
Fan Zhang, William M Wells, and Lauren J O'Donnell. 2022. “Deep Diffusion MRI Registration (DDMReg): A Deep Learning Method for Diffusion MRI Registration.” IEEE Transactions on Medical Imaging, Pp. in press. Publisher's Version
Fan Zhang, Alessandro Daducci, Yong He, Simona Schiavi, Caio Seguin, Robert Smith, Chun-Hung Yeh, Tengda Zhao, and Lauren J O'Donnell. 2022. “Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: a review.” NeuroImage, Pp. in press. Publisher's Version
Leo Zekelman*, Fan Zhang*(co-first), Nikos Makris, Jianzhong He, Yuqian Chen, Tengfei Xue, Daniela Liera, Daniel L. Drane, Yogesh Rathi, Alexandra J. Golby, and Lauren J. O'Donnell. 2022. “White Matter Association Tracts Underlying Language and Theory of Mind: An investigation of 809 Brains from the Human Connectome Project.” NeuroImage, 246, Pp. 118739.
2021
Jianzhong He*, Fan Zhang*(co-first), Guoqiang Xie, Shun Yao, Yuanjing Feng, Dhiego CA Bastos, Yogesh Rathi, Nikos Makris, Ron Kikinis, Alexandra J Golby, and Lauren J. O'Donnell. 2021. “Comparison of multiple tractography methods for reconstruction of the retinogeniculate visual pathway using diffusion MRI.” Human Brain Mapping, 42, 12, Pp. 3887-3904. Publisher's Version
Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, and Lauren J O'Donnell. 2021. “Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation.” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Pp. 497-507. Springer. Publisher's Version
MICCAI Student Travel Award; Early Acceptance
Fan Zhang, Anna Breger, Kang Ik Kevin Cho, Lipeng Ning, Carl-Fredrik Westin, Lauren J O'Donnell, and Ofer Pasternak. 2021. “Deep learning based segmentation of brain tissue from diffusion MRI.” NeuroImage, 233, Pp. 117934. Publisher's Version
Fan Zhang, Kang Ik Kevin Cho, Yingying Tang, Tian Hong Zhang, Sinead Kelly, Maria Di Biase, Lihua Xu, Huijun Li, Keshevan Matcheri, Susan Whitfield, Margaret Niznikiewicz, William Stone, Jijun Wang, Martha Shenton, and Ofer Pasternak. 2021. “MK-Curve improves sensitivity to identify white matter alterations in clinical high risk for psychosis.” NeuroImage, 226, Pp. 117564. Publisher's Version
Yuqian Chen, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O’Donnell, Wojciech Chrzanowski, and Weidong Cai. 2021. “CellTrack R-CNN: A Novel End-To-End Deep Neural Network for Cell Segmentation and Tracking in Microscopy Images.” In International Symposium on Biomedical Imaging (ISBI), Pp. 779–782. IEEE. Publisher's Version
Janna Kochsiek, Lauren J. O'Donnell, Fan Zhang, Elena M. Bonke, Nico Sollmann, Yorghos Tripodis, Tim L. T. Wiegand, David Kaufmann, Lisa Umminger, Maria A. Di Biase, Elisabeth Kaufmann, Vivian Schultz, Michael L. Alosco, Brett M. Martin, Alexander P. Lin, Michael J. Coleman, Yogesh Rathi, Ofer Pasternak, Sylvain Bouix, Robert A. Stern, Martha E. Shenton, and Inga K. Koerte. 2021. “Exposure to Repetitive Head Impacts Is Associated With Corpus Callosum Microstructure and Plasma Total Tau in Former Professional American Football Players.” Journal of Magnetic Resonance Imaging, 64, 6, Pp. 1819–1829. Publisher's Version
Loraine Franke, Daniel Karl I Weidele, Fan Zhang, Suheyla Cetin-Karayumak, Steve Pieper, Lauren J O'Donnell, Yogesh Rathi, and Daniel Haehn. 2021. “FiberStars: Visual Comparison of Diffusion Tractography Data between Multiple Subjects.” In IEEE Pacific Visualization Symposium (PacificVis), Pp. 116–125. IEEE. Publisher's Version
Doron Elad, Suheyla Cetin-Karayumak, Fan Zhang, Kang Ik K Cho, Amanda E Lyall, Johanna Seitz-Holland, Rami Ben-Ari, Godfrey D Pearlson, Carol A Tamminga, John A Sweeney, and others. 2021. “Improving the predictive potential of diffusion MRI in schizophrenia using normative models—Towards subject-level classification.” Human Brain Mapping, 42, 14, Pp. 4658-4670. Publisher's Version
Xinfeng Yu, Xinzhen Yin, Hui Hong, Shuyue Wang, Yeerfan Jiaerken, Fan Zhang, Ofer Pasternak, Ruiting Zhang, Linglin Yang, Min Lou, and others. 2021. “Increased extracellular fluid is associated with white matter fiber degeneration in CADASIL: in vivo evidence from diffusion magnetic resonance imaging.” Fluids and Barriers of the CNS, 18, 1, Pp. 29. Publisher's Version
David J Robles, Ammar Dharani, Kenneth A Rostowsky, Nikhil N Chaudhari, Van Ngo, Fan Zhang, Lauren J O’Donnell, Lauren Green, Nasim Sheikh-Bahaei, Helena C Chui, and Andrei Irimia. 2021. “Older age, male sex, and cerebral microbleeds predict white matter loss after traumatic brain injury.” GeroScience, Pp. in press. Publisher's Version
Johanna Seitz-Holland, Monica Lyons, Leila Kushan, Amy Lin, Julio E. Villalon-Reina, Kang Ik Kevin Cho, Fan Zhang, Tashrif Billah, Sylvain Bouix, Marek Kubicki, Carrie E. Bearden, and Ofer Pasternak. 2021. “Opposing white matter microstructure abnormalities in 22q11.2 deletion and duplication carriers.” Translational Psychiatry, 11, Pp. 580. Publisher's Version
JJ Levitt, Fan Zhang, M Vangel, PG Nestor, Y Rathi, M Kubicki, ME Shenton, and LJ O'Donnell. 2021. “The Organization of Frontostriatal Brain Wiring in Healthy Subjects Using a Novel Diffusion Imaging Fiber Cluster Analysis.” Cerebral Cortex, 31, 12, Pp. 5308–531. Publisher's Version
Alik S. Widge, Fan Zhang, Aishwarya Gosai, George Papadimitrou, Peter Wilson-Braun, Magdalini Tsintou, Senthil Palanivelu, Angela M. Noecker, Cameron C. McIntyre, Lauren O'donnell, Nicole C.R. McLaughlin, Benjamin D. Greenberg, Nikolaos Makris, Darin D. Dougherty, and Yogesh Rathi. 2021. “Patient-Specific Connectomic Models Correlate With, But Do Not Predict, Outcomes in Deep Brain Stimulation for Obsessive-Compulsive Disorder.” Neuropsychopharmacology, Pp. in press. Publisher's Version
Saskia Steinmann, Amanda E. Lyall, Mina Langhein, Felix L. Nägele, Jonas Rauh, Suheyla Cetin-Karayumak, Fan Zhang, Marius Mussmann, Tashrif Billah, Nikos Makris, Ofer Pasternak, Lauren J. O'Donnell, Yogesh Rathi, Marek Kubicki, Gregor Leicht, Martha E. Shenton, and Christoph Mulert. 2021. “Sex-Related Differences in White Matter Asymmetry and Its Implications for Verbal Working Memory in Psychosis High-Risk State.” Frontiers in Psychiatry, 12, Pp. 923. Publisher's Version
Kurt G. Schilling, François Rheault, Laurent Petit, .., Fan Zhang, Nikos Makris, Alexandra Golby, .., Bennett A. Landman, and Maxime Descoteaux. 2021. “Tractography dissection variability: what happens when 42 groups dissect 14 white matter bundles on the same dataset?” NeuroImage, Pp. 118502. Publisher's Version
Maria A Di Biase, Suheyla Cetin-Karayumak, Amanda E Lyall, Andrew Zalesky, Kang Ik Kevin Cho, Fan Zhang, Marek Kubicki, Yogesh Rathi, Monica G Lyons, Sylvain Bouix, and others. 2021. “White matter changes in psychosis risk relate to development and are not impacted by the transition to psychosis.” Molecular Psychiatry, Pp. in press. Publisher's Version
Tiange Xiang, Yang Song, Chaoyi Zhang, Dongnan Liu, Mei Chen, Fan Zhang, Heng Huang, Lauren J O'Donnell, and Weidong Cai. 2021. “DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis.” arXiv preprint arXiv:2109.05788. Publisher's Version

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