Publications

Journal Article
Fan Zhang, Lipeng Ning, Lauren J O'Donnell, and Ofer Pasternak. 2019. “MK-curve-Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal.” NeuroImage, 196, Pp. 68-80. Publisher's Version
Fan Zhang, Ye Wu, Isaiah Norton, Yogesh Rathi, Alexandra J Golby, and Lauren J O'Donnell. 2019. “Test–retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.” Human brain mapping, 40, 10, Pp. 3041-3057. Publisher's Version
Maria Angelique Di Biase, Fan Zhang, Amanda Lyall, Marek Kubicki, René CW Mandl, Iris E Sommer, and Ofer Pasternak. 2019. “Neuroimaging auditory verbal hallucinations in schizophrenia patient and healthy populations.” Psychological Medicine, Pp. in press. Publisher's Version
Fan Zhang, Ye Wu, Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, and Lauren J. O'Donnell. 2018. “An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.” NeuroImage, 179, Pp. 429-447. Publisher's Version
Valerie J Sydnor, Ana Maria Rivas-Grajales, Amanda E Lyall, Fan Zhang, Sylvain Bouix, Sarina Karmacharya, Martha E Shenton, Carl-Fredrik Westin, Nikos Makris, Demian Wassermann, Lauren J. O'Donnell, and Marek Kubicki. 2018. “A comparison of three fiber tract delineation methods and their impact on white matter analysis.” NeuroImage, 178, Pp. 318-331. Publisher's Version
Shun Gong, Fan Zhang, Isaiah Norton, Walid I Essayed, Prashin Unadkat, Laura Rigolo, Ofer Pasternak, Yogesh Rathi, Lijun Hou, Alexandra J Golby, and Lauren J. O'Donnell. 2018. “Free water modeling of peritumoral edema using multi-fiber tractography: Application to tracking the arcuate fasciculus for neurosurgical planning.” PloS one, 13, 5, Pp. e0197056 (co-first-author). Publisher's Version
Yi Hong, Lauren J O'Donnell, Peter Savadjiev, Fan Zhang, Demian Wassermann, Ofer Pasternak, Hans Johnson, Jane Paulsen, Jean-Paul Vonsattel, Nikos Makris, C-F Westin, and Yogesh Rathi. 2018. “Genetic load determines atrophy in hand cortico-striatal pathways in presymptomatic Huntington's disease.” Human Brain Mapping, 39, 10, Pp. 3871-3883. Publisher's Version
Ye Wu, Fan Zhang, Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, Yogesh Rathi, Yuanjing Feng, Huawang Wu, and Lauren J. O'Donnell. 2018. “Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.” NeuroImage, 181, Pp. 16-29 (co-first-author). Publisher's Version
Amanda Lyall, Nathaniel Somes, Fan Zhang, James Robertson, Lauren J O’Donnell, Yogesh Rathi, Ofer Pasternak, Peter Savadjiev, Martin Styner, Zachary Fitzgerald, and others. 2018. “T201. The study of white matter maturation in three populations of genetic high risk for schizophrenia individuals spanning the developmental timeline.” Schizophrenia Bulletin, 44, suppl_1, Pp. S194–S195. Publisher's Version
Angela Albi, Antonio Meola, Fan Zhang, Pegah Kahali, Laura Rigolo, Chantal M.W. Tax, Pelin Aksit Ciris, Walid I. Essayed, Prashin Unadkat, Isaiah Norton, Yogesh Rathi, Olutayo Olubiyi, Alexandra J. Golby, and Lauren J. O'Donnell. 2018. “Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects.” Journal of Neuroimaging, 28, 2, Pp. 173-182. Publisher's Version
Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborahand Waber, Borjan Gagoski, Kiera Sarill, Hesham Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, and Lauren J. O'Donnell. 2018. “Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.” NeuroImage, 171, Pp. 341-354. Publisher's Version
Fan Zhang, Peter Savadjiev, Weidong Cai, Yang Song, Yogesh Rathi, Birkan Tunç, Drew Parker, Tina Kapur, Robert T. Schultz, Nikos Makris, Ragini Verma, and Lauren J. O'Donnell. 2018. “Whole brain white matter connectivity analysis using machine learning: an application to autism.” NeuroImage, 172, Pp. 826-837. Publisher's Version
Lauren J. O’Donnell, Yannick Suter, Laura Rigolo, Pegah Kahali, Fan Zhang, Isaiah Norton, Angela Albi, Olutayo Olubiyi, Antonio Meola, Walid I Essayed, Prashin Unadkat, Pelin Aksit Ciris, William M. Wells III, Yogesh Rathi, Carl-Fredrik Westin, and Alexandra J. Golby. 2017. “Automated white matter fiber tract identification in patients with brain tumors.” NeuroImage: Clinical, 13, Pp. 138–153. Publisher's Version
Yang Song, Li Qing, Fan Zhang, Heng Huang, Dagan Feng, Yang Wang, Mei Chen, and Weidong Cai. 2017. “Dual Discriminative Local Coding for Tissue Aging Analysis.” Medical Image Analysis, 38, Pp. 65-76. Publisher's Version
Isaiah Norton, Ibn Essayed, Fan Zhang, Sonia Pujol, Alex Yarmarkovich, Alexandra Golby, Gordon Kindlmann, Demian Wasserman, Raul San José Estepar, Yogesh Rathi, Steve Pieper, Ron Kikinis, Hans Johnson, Carl-Fredrik Westin, and Lauren J. O'Donnell. 2017. “SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research.” Cancer Research, 77, 21, Pp. e101–103. Publisher's Version
Walid I. Essayed, Fan Zhang, Prashin Unadkat, G. Rees Cosgrove, Alexandra J. Golby, and Lauren J. O'Donnell. 2017. “White matter tractography for neurosurgical planning: A topography-based review of the current state of the art.” NeuroImage: Clinical, 15, Pp. 659-672. Publisher's Version
Zhenrui Chen, Yanmei Tie, Olutayo Olubiyi, Fan Zhang, Alireza Mehrtash, Laura Rigolo, Pegah Kahali, Isaiah Norton, Ofer Pasternak, Yogesh Rathi, Lauren J. O’Donnell, and Alexandra J. Golby. 2016. “Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography.” International journal of computer assisted radiology and surgery, 11, 8, Pp. 1475–1486. Publisher's Version
Fan Zhang, Yang Song, Weidong Cai, Alexander G Hauptmann, Sidong Liu, Sonia Pujol, Ron Kikinis, Michael J Fulham, David Dagan Feng, and Mei Chen. 2016. “Dictionary pruning with visual word significance for medical image retrieval.” Neurocomputing, 177, Pp. 75–88. Publisher's Version
Fan Zhang, Yang Song, Weidong Cai, Sidong Liu, Siqi Liu, Sonia Pujol, Ron Kikinis, Yong Xia, Michael J Fulham, and David Dagan Feng. 2016. “Pairwise latent semantic association for similarity computation in medical imaging.” IEEE transactions on Biomedical Engineering, 63, 5, Pp. 1058–1069. Publisher's Version
Sidong Liu, Weidong Cai, Siqi Liu, Fan Zhang, Michael Fulham, Dagan Feng, Sonia Pujol, and Ron Kikinis. 2015. “Multimodal neuroimaging computing: a review of the applications in neuropsychiatric disorders.” Brain informatics, 2, 3, Pp. 167–180. Publisher's Version

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