Publications

2020
Guoqiang Xie*, Fan Zhang*(co-first), Laura Leung, Michael A Mooney, Lorenz Epprecht, Isaiah Norton, Yogesh Rathi, Ron Kikinis, Ossama Al-Mefty, Nikos Makris, Alexandra J Golby, and Lauren J O'Donnell. 2020. “Anatomical assessment of trigeminal nerve tractography using diffusion MRI: A comparison of acquisition b-values and single-and multi-fiber tracking strategies.” NeuroImage: Clinical, 25, Pp. 102160. Publisher's Version
Fan Zhang, Guoqiang Xie, Laura Leung, Michael Mooney, Lorenz Epprecht, Isaiah Norton, Yogesh Rathi, Ron Kikinis, Ossama Al-Mefty, Nikos Makris, Alexandra J. Golbya, and Lauren J. O’Donnell. 2020. “Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification.” NeuroImage, 220, Pp. 117063. Publisher's Version
Fan Zhang, Suheyla Cetin Karayumak, Nico Hoffmann, Yogesh Rathi, Alexandra J Golby, and Lauren J O'Donnell. 2020. “Deep white matter analysis (DeepWMA): fast and consistent tractography segmentation.” Medical Image Analysis, 65, Pp. 101761. Publisher's Version
Fan Zhang, Thomas Noh, Parikshit Juvekar, Sarah F. Frisken, Laura Rigolo, Isaiah Norton, Tina Kapur, Sonia Pujol, William Wells, Alex Yarmarkovich, Gordon Kindlmann, Demian Wassermann, Raul San Jose Estepar, Yogesh Rathi, Ron Kikinis, Hans J. Johnson, Carl-Fredrik Westin, Steve Pieper, Alexandra J. Golby, and Lauren J. O'Donnell. 2020. “SlicerDMRI: Diffusion MRI and Tractography Research Software for Brain Cancer Surgery Planning and Visualization.” JCO Clinical Cancer Informatics, 4, Pp. 299–309. Publisher's Version
Daniel Haehn, Loraine Franke, Fan Zhang, Suheyla Cetin Karayumak, Steve Pieper, Lauren O'donnell, and Yogesh Rathi. 2020. “TRAKO: Efficient Transmission of Tractography Data for Visualization.” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Pp. 322-332. Springer. Publisher's Version
Early Acceptance
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'donnell, Heng Huang, Mei Chen, and Weidong Cai. 2020. “Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-weighting.” In Conference on Computer Vision and Pattern Recognition (CVPR), Pp. 4242-4251. IEEE. Publisher's Version
Jarrett R Rushmore, Peter Wilson-Braun, George Papadimitriou, Isaac Ng, Yogesh Rathi, Fan Zhang, Lauren O'donnell, Marek Kubicki, Ed Yeterian, Jean-Jacques Lemaire, Evan Calabrese, Allen G Johnson, Ron Kikinis, and Nikos Makris. 2020. “3D Exploration of the Brainstem in 50-micron Resolution MRI.” Frontiers in Neuroanatomy, 14, Pp. 40. Publisher's Version
Jingqiang Wang, Fan Zhang, Changchen Zhao, Qingrun Zeng, Jianzhong He, Lauren J O'Donnell, and Yuanjing Feng. 2020. “Investigation of local white matter abnormality in Parkinson's disease by using an automatic fiber tract parcellation.” Behavioural Brain Research, 394, Pp. 112805. Publisher's Version
Andrei Irimia, Di Fan, Nikhil N Chaudhari, Van Ngo, Fan Zhang, Shantanu H Joshi, and Lauren J O'Donnell. 2020. “Mapping cerebral connectivity changes after mild traumatic brain injury in older adults using diffusion tensor imaging and Riemannian matching of elastic curves.” In International Symposium on Biomedical Imaging (ISBI), Pp. 1690–1693. IEEE. Publisher's Version
James J Levitt, Paul G Nestor, Marek Kubicki, Amanda E Lyall, Fan Zhang, Tammy Riklin-Raviv, Lauren J O'Donnell, Robert W McCarley, Martha E Shenton, and Yogesh Rathi. 2020. “Miswiring of Frontostriatal Projections in Schizophrenia.” Schizophrenia Bulletin, 46, 4, Pp. 990–998. Publisher's Version
Maria Angelique Di Biase, Fan Zhang, Amanda Lyall, Marek Kubicki, René CW Mandl, Iris E Sommer, and Ofer Pasternak. 2020. “Neuroimaging auditory verbal hallucinations in schizophrenia patient and healthy populations.” Psychological Medicine, 50, 3, Pp. 403–412. Publisher's Version
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren O'donnell, Heng Huang, Mei Chen, and Weidong Cai. 2020. “PDAM: A Panoptic-level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images.” IEEE Transactions on Medical Imaging, 40, 1, Pp. 154–165. Publisher's Version
2019
Fan Zhang, Nico Hoffmann, Suheyla Cetin Karayumak, Yogesh Rathi, Alexandra J Golby, and Lauren J O'Donnell. 2019. “Deep white matter analysis: Fast, consistent tractography segmentation across populations and dMRI acquisitions.” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Pp. 599–608. Springer. Publisher's Version
Fan Zhang, Lipeng Ning, Lauren J O'Donnell, and Ofer Pasternak. 2019. “MK–curve: Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal.” NeuroImage, 196, Pp. 68–80. Publisher's Version
Fan Zhang, Ye Wu, Isaiah Norton, Yogesh Rathi, Alexandra J Golby, and Lauren J O'Donnell. 2019. “Test–retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.” Human Brain Mapping, 40, 10, Pp. 3041–3057. Publisher's Version
Dipesh Khanal, Fan Zhang, Yang Song, Herman Hau, Archana Gautam, Seiji Yamaguchi, Jamie Uertz, Stewart Mills, Alexey Kondyurin, Jonathan C Knowles, George Georgiou, Iqbal Ramzan, Weidong Cai, Kee Woei Ng, and Wojciech Chrzanowski. 2019. “Biological impact of nanodiamond particles–label free, high-resolution methods for nanotoxicity assessment.” Nanotoxicology, 13, 9, Pp. 1210–1226. Publisher's Version
Donghao Zhang, Yang Song, Dongnan Liu, Chaoyi Zhang, Yicheng Wu, Heng Wang, Fan Zhang, Yong Xia, Lauren J O'Donnell, and Weidong Cai. 2019. “Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation.” In Australasian Joint Conference on Artificial Intelligence, Pp. 563–573. Springer. Publisher's Version
Di Fan, Nikhil N Chaudhari, Kenneth A Rostowsky, Maria Calvillo, Sean K Lee, Nahian F Chowdhury, Fan Zhang, Lauren J O'Donnell, and Andrei Irimia. 2019. “Post-traumatic cerebral microhemorrhages and their effects upon white matter connectivity in the aging human brain.” In Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Pp. 198–203. IEEE. Publisher's Version
Ridho Akbar, Yuanjing Feng, Fan Zhang, Jianzhong He, Qingrun Zeng, Lipeng Ning, Carl-Fredrik Westin, and Lauren J. O'Donnell. 2019. “Spatial sparse estimation of fiber orientation distribution using deep alternating directions method of multipliers network.” In Computational Diffusion MRI (CDMRI), Pp. 79-89. Springer. Publisher's Version
Marco Pizzolato, Marco Palombo, Elisenda Bonet-Carne, .., Farshid Sepehrband, Fan Zhang, and Jana Hutter. 2019. “Acquiring and predicting multidimensional diffusion (MUDI) data: an open challenge.” In Computational Diffusion MRI (CDMRI), Pp. 195-208. Springer. Publisher's Version
Oral Talk

Pages