Publications

2019
Dongnan Liu, Donghao Zhang, Yang Song, Chaoyi Zhang, Fan Zhang, Lauren O'donnell, and Weidong Cai. 2019. “Nuclei Segmentation via a Deep Panoptic Model with Semantic Feature Fusion.” In The 28th International Joint Conference on Artificial Intelligence (IJCAI), Pp. 861–868. IJCAR. Publisher's Version
IJCAI Travel Grant/Award
2018
Fan Zhang, Ye Wu, Isaiah Norton, Yogesh Rathi, Nikos Makris, and Lauren J. O'Donnell. 2018. “An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.” NeuroImage, 179, Pp. 429-447. Publisher's Version
Shun Gong*, Fan Zhang*(co-first), Isaiah Norton, Walid I Essayed, Prashin Unadkat, Laura Rigolo, Ofer Pasternak, Yogesh Rathi, Lijun Hou, Alexandra J Golby, and Lauren J. O'Donnell. 2018. “Free water modeling of peritumoral edema using multi-fiber tractography: Application to tracking the arcuate fasciculus for neurosurgical planning.” PloS one, 13, 5, Pp. e0197056. Publisher's Version
Ye Wu*, Fan Zhang*(co-first), Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, Yogesh Rathi, Yuanjing Feng, Huawang Wu, and Lauren J. O'Donnell. 2018. “Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.” NeuroImage, 181, Pp. 16-29. Publisher's Version
Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborahand Waber, Borjan Gagoski, Kiera Sarill, Hesham Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, and Lauren J. O'Donnell. 2018. “Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.” NeuroImage, 171, Pp. 341-354. Publisher's Version
Fan Zhang, Peter Savadjiev, Weidong Cai, Yang Song, Yogesh Rathi, Birkan Tunç, Drew Parker, Tina Kapur, Robert T. Schultz, Nikos Makris, Ragini Verma, and Lauren J. O'Donnell. 2018. “Whole brain white matter connectivity analysis using machine learning: an application to autism.” NeuroImage, 172, Pp. 826-837. Publisher's Version
Dongnan Liu, Donghao Zhang, Yang Song, Fan Zhang, Lauren J. O'Donnell, and Weidong Cai. 2018. “3D Large Kernel Anisotropic Network for Brain Tumor Segmentation.” In International Conference on Neural Information Processing (ICONIP), Pp. 444-454. Springer.
Yi Hong, Lauren J O'Donnell, Peter Savadjiev, Fan Zhang, Demian Wassermann, Ofer Pasternak, Hans Johnson, Jane Paulsen, Jean-Paul Vonsattel, Nikos Makris, C-F Westin, and Yogesh Rathi. 2018. “Genetic load determines atrophy in hand cortico-striatal pathways in presymptomatic Huntington's disease.” Human Brain Mapping, 39, 10, Pp. 3871-3883. Publisher's Version
Angela Albi, Antonio Meola, Fan Zhang, Pegah Kahali, Laura Rigolo, Chantal M.W. Tax, Pelin Aksit Ciris, Walid I. Essayed, Prashin Unadkat, Isaiah Norton, Yogesh Rathi, Olutayo Olubiyi, Alexandra J. Golby, and Lauren J. O'Donnell. 2018. “Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects.” Journal of Neuroimaging, 28, 2, Pp. 173-182. Publisher's Version
Valerie J Sydnor, Ana Maria Rivas-Grajales, Amanda E Lyall, Fan Zhang, Sylvain Bouix, Sarina Karmacharya, Martha E Shenton, Carl-Fredrik Westin, Nikos Makris, Demian Wassermann, Lauren J. O'Donnell, and Marek Kubicki. 2018. “A comparison of three fiber tract delineation methods and their impact on white matter analysis.” NeuroImage, 178, Pp. 318-331. Publisher's Version
2017
Fan Zhang, Pegah Kahali, Yannick Suter, Isaiah Norton, Laura Rigolo, Peter Savadjiev, Yang Song, Yogesh Rathi, Weidong Cai, William M. Wells III, Alexandra J. Golby, and Lauren J. O'Donnell. 2017. “Automated Connectivity-Based Groupwise Cortical Atlas Generation: Application to Data of Neurosurgical Patients with Brain Tumors for Cortical Parcellation Prediction.” In International Symposium on Biomedical Imaging (ISBI), Pp. 774-777. IEEE. Publisher's Version
NIH / NIBIB Travel Award; Oral Talk
Fan Zhang, Isaiah Norton, Weidong Cai, Yang Song, William M. Wells III, and Lauren J. O'Donnell. 2017. “Comparison between two white matter segmentation strategies: an investigation into white matter segmentation consistency.” In International Symposium on Biomedical Imaging (ISBI), Pp. 796-799. IEEE. Publisher's Version
NIH / NIBIB Travel Award; Oral Talk
Fan Zhang, Weining Wu, Lipeng Ning, Gloria McAnulty, Deborahand Waber, Borjan Gagoski, Kiera Sarill, Hesham Hamoda, Yang Song, Weidong Cai, Yogesh Rathi, and Lauren J. O'Donnell. 2017. “Supra-threshold Fiber Cluster Statistics for Data-driven Whole Brain Tractography Analysis.” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Pp. 556-565. Springer. Publisher's Version
Lauren J. O'Donnell, Yannick Suter, Laura Rigolo, Pegah Kahali, Fan Zhang, Isaiah Norton, Angela Albi, Olutayo Olubiyi, Antonio Meola, Walid I Essayed, Prashin Unadkat, Pelin Aksit Ciris, William M. Wells III, Yogesh Rathi, Carl-Fredrik Westin, and Alexandra J. Golby. 2017. “Automated white matter fiber tract identification in patients with brain tumors.” NeuroImage: Clinical, 13, Pp. 138–153. Publisher's Version
Yang Song, Li Qing, Fan Zhang, Heng Huang, Dagan Feng, Yang Wang, Mei Chen, and Weidong Cai. 2017. “Dual Discriminative Local Coding for Tissue Aging Analysis.” Medical Image Analysis, 38, Pp. 65-76. Publisher's Version
Yang Song, Fan Zhang, Qing Li, Heng Huang, Lauren J. O'Donnell, and Weidong Cai. 2017. “Locally-Transferred Fisher Vectors for Texture Classification.” In International Conference on Computer Vision (ICCV), Pp. 4912-4920. IEEE. Publisher's Version
Isaiah Norton, Ibn Essayed, Fan Zhang, Sonia Pujol, Alex Yarmarkovich, Alexandra Golby, Gordon Kindlmann, Demian Wasserman, Raul San José Estepar, Yogesh Rathi, Steve Pieper, Ron Kikinis, Hans Johnson, Carl-Fredrik Westin, and Lauren J. O'Donnell. 2017. “SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research.” Cancer Research, 77, 21, Pp. e101–103. Publisher's Version
Walid I. Essayed, Fan Zhang, Prashin Unadkat, G. Rees Cosgrove, Alexandra J. Golby, and Lauren J. O'Donnell. 2017. “White matter tractography for neurosurgical planning: A topography-based review of the current state of the art.” NeuroImage: Clinical, 15, Pp. 659-672. Publisher's Version
2016
Fan Zhang, Yang Song, Weidong Cai, Alexander G Hauptmann, Sidong Liu, Sonia Pujol, Ron Kikinis, Michael J Fulham, David Dagan Feng, and Mei Chen. 2016. “Dictionary pruning with visual word significance for medical image retrieval.” Neurocomputing, 177, Pp. 75–88. Publisher's Version
Fan Zhang, Peter Savadjiev, Weidong Cai, Yang Song, Ragini Verma, Carl-Fredrik Westin, and Lauren J. O'Donnell. 2016. “Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging.” In International Symposium on Biomedical Imaging (ISBI), Pp. 564–567. IEEE. Publisher's Version
Finalist for Best Student Paper Award; Oral Talk

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