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Publications

In Press
Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V Dalca, and Juan Eugenio Iglesias. In Press. “Joint segmentation of Multiple Sclerosis lesions and brain anatomy in MRI scans of any contrast and resolution with CNNs.” In Proceedings of IEEE ISBI.
Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, and Adrian V Dalca. In Press. “Learning MRI contrast-agnostic registration.” In Proceedings of IEEE ISBI.
2020
Henry FJ Tregidgo, Adrià Casamitjana, Caitlin S Latimer, Mitchell D Kilgore, Eleanor Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V Dalca, and Christine L MacDonald. 2020. “3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology.” International Conference on Medical Image Computing and Computer-Assisted Intervention. Springer, Cham.
Loic Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sebastien Ourselin, Juan Eugenio Iglesias, and Tom Vercauteren. 2020. “Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications.” arXiv preprint arXiv:2012.15343.
Evan M Yu, Juan Eugenio Iglesias, Adrian V Dalca, and Mert R Sabuncu. 2020. “An Auto-Encoder Strategy for Adaptive Image Segmentation.” arXiv preprint arXiv:2004.13903.
Yu M Evan, Juan Eugenio Iglesias, Adrian V Dalca, and Mert R Sabuncu. 2020. “An Auto-Encoder Strategy for Adaptive Image Segmentation.” Medical Imaging with Deep Learning.
Martina Bocchetta, Juan Eugenio Iglesias, Viorica Chelban, Edwin Jabbari, Ruth Lamb, Lucy L Russell, Caroline V Greaves, Mollie Neason, David M Cash, and David L Thomas. 2020. “Automated brainstem segmentation detects differential involvement in atypical parkinsonian syndromes.” Journal of movement disorders, 13, 1, Pp. 39.
Benjamin Billot, Martina Bocchetta, Emily Todd, Adrian V Dalca, Jonathan D Rohrer, and Juan Eugenio Iglesias. 2020. “Automated segmentation of the hypothalamus and associated subunits in brain MRI.” NeuroImage, 223, Pp. 117287.
Iman Aganj, Aina Frau-Pascual, Juan E Iglesias, Anastasia Yendiki, Jean C Augustinack, David H Salat, and Bruce Fischl. 2020. “Compensatory Brain Connection Discovery in Alzheimer's Disease.” 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI). IEEE.
Yunguan Fu, Nina Montaña Brown, Shaheer U Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, and Stefano B Blumberg. 2020. “DeepReg: a deep learning toolkit for medical image registration.” arXiv preprint arXiv:2011.02580.
Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Ellen P Grant, and Bruce Fischl. 2020. “Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years.” Neuroimage, Pp. 116946.
Nalini M Singh, Juan Eugenio Iglesias, Elfar Adalsteinsson, Adrian V Dalca, and Polina Golland. 2020. “Joint Frequency-and Image-Space Learning for Fourier Imaging.” arXiv preprint arXiv:2007.01441.
Juan Eugenio Iglesias, Benjamin Billot, Yael Balbastre, Azadeh Tabari, John Conklin, Daniel C Alexander, Polina Golland, Brian L Edlow, and Bruce Fischl. 2020. “Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.” arXiv preprint arXiv:2012.13340.
Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, and Adrian V Dalca. 2020. “Learning Multi-Modal Image Registration without Real Data.” arXiv preprint arXiv:2004.10282.
Benjamin Billot, Douglas Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, and Adrian V Dalca. 2020. “A Learning Strategy for Contrast-agnostic MRI Segmentation.” arXiv preprint arXiv:2003.01995.
Matteo Mancini, Adrià Casamitjana, Loic Peter, Eleanor Robinson, Shauna Crampsie, David L Thomas, Janice L Holton, Zane Jaunmuktane, and Juan Eugenio Iglesias. 2020. “A multimodal computational pipeline for 3D histology of the human brain.” bioRxiv.
Mancini Matteo, Casamitjana Adrià, Peter Loic, Eleanor Robinson, Crampsie Shauna, David L Thomas, Janice L Holton, Jaunmuktane Zane, and Juan Eugenio Iglesias. 2020. “A multimodal computational pipeline for 3D histology of the human brain.” Scientific Reports (Nature Publisher Group), 10, 1.
Benjamin Billot, Eleanor D Robinson, Adrian V Dalca, and Juan Eugenio Iglesias. 2020. “Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast.” arXiv preprint arXiv:2004.10221.
Donatas Sederevičius, Didac Vidal Piñeiro, Øystein Sørensen, Koen Van Leemput, Juan Eugenio Iglesias, Adrian Vasile Dalca, Douglas Greve, Bruce Fischl, Atle Bjørnerud, and Kristine Beate Walhovd. 2020. “Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer− ASEG and SAMSEG.” bioRxiv.
Emma M Brown, Meghan E Pierce, Dustin C Clark, Bruce R Fischl, Juan E Iglesias, William P Milberg, Regina E McGlinchey, and David H Salat. 2020. “Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners.” Neuroimage, 210, Pp. 116563.

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