Publications

2022
Alessia Atzeni, Loic Peter, Eleanor Robinson, Emily Blackburn, Juri Althonayan, Daniel C Alexander, and Juan Eugenio Iglesias. 2022. “Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length.” Medical Image Analysis, Pp. 102549.
Philipp G Sämann, Juan Eugenio Iglesias, Boris Gutman, Dominik Grotegerd, Ramona Leenings, Claas Flint, Udo Dannlowski, Emily K Clarke-Rubright, Rajendra A Morey, Theo GM van Erp, and others. 2022. “FreeSurfer-based segmentation of hippocampal subfields: A review of methods and applications, with a novel quality control procedure for ENIGMA studies and other collaborative efforts.” Human brain mapping, 43, 1, Pp. 207–233.
Nalini M Singh, Jordan B Harrod, Sandya Subramanian, Mitchell Robinson, Ken Chang, Suheyla Cetin-Karayumak, Adrian Vasile Dalca, Simon Eickhoff, Michael Fox, Loraine Franke, and others. 2022. “How Machine Learning is Powering Neuroimaging to Improve Brain Health.” Neuroinformatics, Pp. 1–22.
Noah L Shapiro, Emily G Todd, Benjamin Billot, David M Cash, Juan Eugenio Iglesias, Jason D Warren, Jonathan D Rohrer, and Martina Bocchetta. 2022. “In vivo hypothalamic regional volumetry across the frontotemporal dementia spectrum.” NeuroImage: Clinical, 35, Pp. 103084.
Valentina Perosa, Jan Oltmer, Leon P Munting, Whitney M Freeze, Corinne A Auger, Ashley A Scherlek, Andre J van der Kouwe, Juan Eugenio Iglesias, Alessia Atzeni, Brian J Bacskai, and others. 2022. “Perivascular space dilation is associated with vascular amyloid-$\beta$ accumulation in the overlying cortex.” Acta Neuropathologica, 143, 3, Pp. 331–348.
Lukas Haider, Simon Hametner, Verena Endmayr, Stephanie Mangesius, Andrea Eppensteiner, Josa M Frischer, Juan Eugenio Iglesias, Frederik Barkhof, and Gregor Kasprian. 2022. “Post-mortem correlates of Virchow-Robin spaces detected on in vivo MRI.” Journal of Cerebral Blood Flow & Metabolism, Pp. 0271678X211067455.
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Lo{\"ıc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, and Juan Eugenio Iglesias. 2022. “Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas.” Medical image analysis, 75, Pp. 102265.
Sonia Laguna, Riana Schleicher, Benjamin Billot, Pamela Schaefer, Brenna McKaig, Joshua N Goldstein, Kevin N Sheth, Matthew S Rosen, Taylor W Kimberly, and Juan Eugenio Iglesias. 2022. “Super-resolution of portable low-field MRI in real scenarios: integration with denoising and domain adaptation.” In Medical Imaging with Deep Learning.
Matteo Mancini and Juan Eugenio Iglesias. 2022. “Synthesis for image analysis across modalities.” In Biomedical Image Synthesis and Simulation, Pp. 195–216. Academic Press.
R Bhome, A Zarkali, GEC Thomas, JE Iglesias, JH Cole, and RS Weil. 2022. “Thalamic white matter macrostructure and subnuclei volumes in Parkinson’s disease depression.” npj Parkinson's Disease, 8, 1, Pp. 1–10.
2021
Golia Shafiei, Vincent Bazinet, Mahsa Dadar, Ana Laura Manera, Louis Collins, Alain Dagher, Martina Bocchetta, Emily G Todd, Georgia Peakman, David M Cash, and others. 2021. “Atrophy patterns in sporadic and genetic behavioral variant frontotemporal dementia reflect brain network architecture.” Alzheimer's & Dementia, 17, Pp. e051221.
Douglas N Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V Dalca, Bruce Fischl, Juan Eugenio Iglesias, and Jean C Augustinack. 2021. “A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images.” Neuroimage, 244, Pp. 118610.
Martina Bocchetta, Emily G Todd, Jennifer M Nicholas, Georgia Peakman, David M Cash, Rhian S Convery, Lucy L Russell, David L Thomas, Juan Eugenio Iglesias, John C van Swieten, and others. 2021. “Detecting clinical progression from abnormal regional brain volumes at baseline in genetic frontotemporal dementia: A GENFI study.” Alzheimer's & Dementia, 17, Pp. e050928.
Martina Bocchetta, Emily G Todd, Georgia Peakman, David M Cash, Rhian S Convery, Lucy L Russell, David L Thomas, Juan Eugenio Iglesias, John C van Swieten, Lize C Jiskoot, and others. 2021. “Differential early subcortical involvement in genetic FTD within the GENFI cohort.” NeuroImage: Clinical, 30, Pp. 102646.
Martina Bocchetta, Emily G Todd, Jennifer M Nicholas, Carolin Heller, Imogen J Swift, Georgia Peakman, David M Cash, Rhian S Convery, Lucy L Russell, David L Thomas, and others. 2021. “From brain volumes to subgroup classification in genetic mutation carriers for frontotemporal dementia: A cluster analysis in the GENFI study.” Alzheimer's & Dementia, 17, Pp. e052189.
Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V Dalca, and Juan Eugenio Iglesias. 2021. “Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs.” In 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Pp. 1971–1974. IEEE.
Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Gilberto R González, Daniel C Alexander, Polina Golland, Brian L Edlow, Bruce Fischl, and others. 2021. “Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.” Neuroimage, 237, Pp. 118206.
Malte Hoffmann, Benjamin Billot, Juan E Iglesias, Bruce Fischl, and Adrian V Dalca. 2021. “Learning mri contrast-agnostic registration.” In 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Pp. 899–903. IEEE.
Chao J Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, and others. 2021. “Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution.” NeuroImage, 244, Pp. 118627.
Donatas Sederevičius, Didac Vidal-Piñeiro, Øystein Sørensen, Koen Van Leemput, Juan Eugenio Iglesias, Adrian V Dalca, Douglas N Greve, Bruce Fischl, Atle Bjørnerud, Kristine B Walhovd, and others. 2021. “Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer–ASEG and SAMSEG.” NeuroImage, 237, Pp. 118113.

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