Publications

2017
O’Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM, Rathi Y, Westin C-F, Golby AJ. Automated white matter fiber tract identification in patients with brain tumors. NeuroImage: Clinical 2017;13:138–153.
2016
Shaffer JJ, Ghayoor A, Long JD, Kim RE-Y, Lourens S, O'Donnell LJ, Westin C-F, Rathi Y, Magnotta V, Paulsen JS, Johnson HJ. Longitudinal diffusion changes in prodromal and early HD: Evidence of white-matter tract deterioration. Human Brain Mapping 2016;
Zhang F, Savadjiev P, Ca W, Song Y, Verma R, Westin C-F, O'Donnell LJ. Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. In: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE; 2016 p. 564–567.
Kapur T, Pieper S, Fedorov A, Fillion-Robin JC, Halle M, O'donnell L, Lasso A, Ungi T, Pinter C, Finet J, others. Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience. Medical Image Analysis 2016;
Westin C-F, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, others. Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. NeuroImage 2016;135:345–362.
Fischer DB, Perez DL, Prasad S, Rigolo L, O’Donnell L, Acar D, Meadows M-E, Baslet G, Boes AD, Golby AJ, others. Right inferior longitudinal fasciculus lesions disrupt visual-emotional integration. Social cognitive and affective neuroscience 2016;11(6):945–951.
Chen Z, Tie Y, Olubiyi O, Zhang F, Mehrtash A, Rigolo L, Kahali P, Norton I, Pasternak O, Rathi Y, Golby AJ, O’Donnell LJ. Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. International journal of computer assisted radiology and surgery 2016;:1–12.
Fakhri M, O’Donnell LJ, Rigolo L, Golby AJ. Mapping Eloquent Brain with Functional MRI and DTI. In: Functional Mapping of the Cerebral Cortex. Springer International Publishing; 2016 p. 41–62.
2015
Ning L, Laun F, Gur Y, DiBella EVR, Deslauriers-Gauthier S, Megherbi T, Ghosh A, Zucchelli M, Menegaz G, Fick R, St-Jean S, Paquette M, Aranda R, Descoteaux M, Deriche R, O’Donnell L, Rathi Y. Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?. Medical image analysis 2015;26:316–331.
O'Donnell LJ, Pasternak O. Does diffusion MRI tell us anything about the white matter? An overview of methods and pitfalls. Schizophrenia research 2015;161:133–141.
Chen Z, Tie Y, Olubiyi O, Rigolo L, Mehrtash A, Norton I, Pasternak O, Rathi Y, Golby AJ, O'Donnell LJ. Reconstruction of the arcuate fasciculus for surgical planning in the setting of peritumoral edema using two-tensor unscented Kalman filter tractography. NeuroImage: Clinical 2015;7:815–822.
2014
O'donnell L, Nedjati-Gilani G, Rathi Y, Reisert M, Schneider T. Computational Diffusion MRI: MICCAI Workshop, Boston, MA, USA, September 2014. Springer; 2014.
Chen Z, Tie Y, O'donnell L, Rigolo L, Mehrtash A, Olubiyi O, Norton I, Pasternak O, Rathi Y, Golby A. Resolving the Challenges of Peritumoral Edema in Tracing Arcuate Fasciculus for Surgical Planning Using Two-Tensor Unscented Kalman Filter Tractography. Neuro-Oncology (in Abstracts from the 19th Annual Scientific Meeting of the Society for Neuro-Oncology, Miami, Florida, November 13-16, 2014) 2014;16:v140–v140.
2013
O'Donnell LJ, Golby AJ, Westin C-F. Fiber clustering versus the parcellation-based connectome. NeuroImage 2013;80:283–289.
Schultz T, Nedjati-Gilani G, Venkataraman A, O'donnell L, Panagiotaki E, Vilanova A, Brecheisen R, Kindlmann G, Hermann M, Schunke AC, others. Computational Diffusion MRI and Brain Connectivity. Computer Graphics Forum 2013;32:121–130.
2012
O'Donnell LJ, Rigolo L, Norton I, Wells III WM, Westin C-F, Golby AJ. fMRI-DTI modeling via landmark distance atlases for prediction and detection of fiber tracts. NeuroImage 2012;60:456–70.
O’Donnell LJ, Wells III WM, Golby AJ, Westin C-F. Unbiased Groupwise Registration of White Matter Tractography. In: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2012. Springer Berlin Heidelberg; 2012 p. 123–130.
Wu W, Rigolo L, O’Donnell LJ, Norton I, Shriver S, Golby AJ. Visual pathway study using in vivo DTI tractography to complement classical anatomy. Neurosurgery 2012;70:ons145.
2011
O’Donnell LJ, Westin C-F. An introduction to diffusion tensor image analysis. Neurosurgery Clinics of North America 2011;22:185.
Whitford TJ, Savadjiev P, Kubicki M, O'Donnell LJ, Terry DP, Bouix S, Westin C-F, Schneiderman JS, Bobrow L, Rausch AC, others. Fiber geometry in the corpus callosum in schizophrenia: evidence for transcallosal misconnection. Schizophrenia research 2011;132:69–74.

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