Publications

2017
Zhang F, Kahali P, Suter Y, Norton I, Rigolo L, Savadjiev P, Song Y, Rathi Y, Cai W, Wells WM, others. Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction. In: Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on. IEEE; 2017 p. 774–777.
Zhang F, Norton I, Cai W, Song Y, Wells WM, O'Donnell LJ. Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency. In: Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on. IEEE; 2017 p. 796–799.
Shaffer JJ, Ghayoor A, Long JD, Kim RE-Y, Lourens S, O'Donnell LJ, Westin C-F, Rathi Y, Magnotta V, Paulsen JS, others. Longitudinal diffusion changes in prodromal and early HD: Evidence of white-matter tract deterioration. Human brain mapping 2017;38(3):1460–1477.
Essayed WI, Zhang F, Unadkat P, Cosgrove RG, Golby AJ, O'Donnell LJ. White matter tractography for neurosurgical planning: A topography-based review of the current state of the art. NeuroImage: Clinical 2017;
O’Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM, Rathi Y, Westin C-F, Golby AJ. Automated white matter fiber tract identification in patients with brain tumors. NeuroImage: Clinical 2017;13:138–153.
2016
Schultz T, Nedjati-Gilani G, Venkataraman A, Donnell LO, Panagiotaki E. Computational Diffusion MRI and Brain Connectivity. 2016;
Zhang F, Savadjiev P, Cai W, Song Y, Verma R, Westin C-F, O'Donnell LJ. Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. In: Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on. IEEE; 2016 p. 564–567.
Westin C-F, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, others. Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. Neuroimage 2016;135:345–362.
Chen Z, Tie Y, Olubiyi O, Zhang F, Mehrtash A, Rigolo L, Kahali P, Norton I, Pasternak O, Rathi Y, others. Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. International journal of computer assisted radiology and surgery 2016;:1–12.
Zhang F, Savadjiev P, Ca{\'ı W, Song Y, Verma R, Westin C-F, O'Donnell LJ. Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. In: Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on. IEEE; 2016 p. 564–567.
Kapur T, Pieper S, Fedorov A, Fillion-Robin JC, Halle M, O'donnell L, Lasso A, Ungi T, Pinter C, Finet J, others. Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. 2016;
Fakhri M, O’Donnell LJ, Rigolo L, Golby AJ. Mapping Eloquent Brain with Functional MRI and DTI. In: Functional Mapping of the Cerebral Cortex. Springer International Publishing; 2016 p. 41–62.
Westin C-F, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, others. Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. NeuroImage 2016;135:345–362.
Zhang F, Savadjiev P, Ca W, Song Y, Verma R, Westin C-F, O'Donnell LJ. Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging. In: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE; 2016 p. 564–567.
Kapur T, Pieper S, Fedorov A, Fillion-Robin JC, Halle M, O'donnell L, Lasso A, Ungi T, Pinter C, Finet J, others. Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience. Medical Image Analysis 2016;
Westin C-F, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, others. Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. NeuroImage 2016;135:345–362.
Fischer DB, Perez DL, Prasad S, Rigolo L, O’Donnell L, Acar D, Meadows M-E, Baslet G, Boes AD, Golby AJ, others. Right inferior longitudinal fasciculus lesions disrupt visual-emotional integration. Social cognitive and affective neuroscience 2016;11(6):945–951.
Chen Z, Tie Y, Olubiyi O, Zhang F, Mehrtash A, Rigolo L, Kahali P, Norton I, Pasternak O, Rathi Y, Golby AJ, O’Donnell LJ. Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. International journal of computer assisted radiology and surgery 2016;:1–12.
Fakhri M, O’Donnell LJ, Rigolo L, Golby AJ. Mapping Eloquent Brain with Functional MRI and DTI. In: Functional Mapping of the Cerebral Cortex. Springer International Publishing; 2016 p. 41–62.
2015
O’Donnell LJ, Schultz T. Statistical and machine learning methods for neuroimaging: examples, challenges, and extensions to diffusion imaging data. In: Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Springer, Cham; 2015 p. 299–319.

Pages