Publications

2017
Ruoshi Yuan, Xiaomei Zhu, Gaowei Wang, Site Li, and Ping Ao. 2/17/2017. “Cancer as robust intrinsic state shaped by evolution: a key issues review.” Rep. Prog. Phys., 80, 4, Pp. 1-21. Publisher's Version ropp_cancer.pdf
Ruoshi Yuan, Suzhan Zhang, Jiekai Yu, Yanqin Huang, Demin Lu, Runtan Cheng, Sui Huang, Ping Ao, Shu Zheng, Leroy Hood, and Xiaomei Zhu. 2017. “Beyond cancer genes: colorectal cancer as robust intrinsic states formed by molecular interactions.” Open Biol., 7, Pp. 170169. Publisher's Version 170169.full_.pdf
Hang Su, Gaowei Wang, Ruoshi Yuan, Junqiang Wang, Ping Ao, and Xiaomei Zhu. 2017. “Decoding early myelopoiesis from dynamics of core endogenous network.” Sci. China Life Sci., 60, 6, Pp. 627-646. Publisher's Version Decoding.pdf
Ying Tang*, Ruoshi Yuan*, Gaowei Wang, Xiaomei Zhu, and Ping Ao. 2017. “Potential landscape of high dimensional nonlinear stochastic dynamics with large noise.” Sci. Rep., 2017, Pp. 15762. Publisher's Version sci_rep_2017.pdf
Ruoshi Yuan, Ying Tang, and Ping Ao. 2017. “SDE decomposition and A-type stochastic interpretation in nonequilibrium processes.” Front. Phys., 12, 6, Pp. 120201. FOP.pdf
2016
Ruoshi Yuan, S.-F. Ma, X.-M. Zhu, J. Li, Y.-H. Liang, T. Liu, Y.-X. Zhu, B.-B. Zhang, S. Tan, H.-J. Guo, S.-G. Guan, P. Ao, and Zhou G.-Q. 2016. “Core level regulatory network of osteoblast as molecular mechanism for osteoporosis and treatment.” Oncotarget, Pp. 6923. oncotarget.pdf
Gaowei Wang, Hang Su, Helin Yu, Ruoshi Yuan, Xiaomei Zhu, and Ping Ao. 2016. “Endogenous network states predict gain or loss of functions for genetic mutations in hepatocellular carcinoma.” J. R. Soc. Interface, 13, 115, Pp. 20151115. interface.pdf
Ruoshi Yuan, Xiaomei Zhu, J. P. Radich, and Ping Ao. 2016. “From molecular interaction to acute promyelocytic leukemia: Calculating leukemogenesis and remission from endogenous molecular-cellular network.” Sci. Rep., 6, Pp. 24307. sci_rep.pdf
Yongcong Chen, Ruoshi Yuan, Ping Ao, Xu Minjuan, and Xiaomei Zhu. 2016. “Towards stable kinetics of large metabolic networks: Nonequilibrium potential function approach.” Phys. Rev. E, 93, 6, Pp. 062409. physreve.93.pdf
Ruoshi Yuan, Ying Tang, and Ping Ao. 2016. “On Uniqueness of "SDE Decomposition'' in A-type Stochastic Integration.” J. Chem. Phys., 145, 14, Pp. 147104. jcp2016.pdf
2015
Ying Tang, Ruoshi Yuan, and Ping Ao. 2015. “Anomalous free energy changes induced by topology.” Phys. Rev. E, 92, 6, Pp. 062129. physreve.92.pdf
Xiaomei Zhu, Ruoshi Yuan, Leroy Hood, and Ping Ao. 2015. “Endogenous molecular-cellular hierarchical modeling of prostate carcinogenesis uncovers robust structure.” Prog. Biophys. Mol. Biol., 117, 1, Pp. 30-42. pbmb.pdf
Ying Tang, Ruoshi Yuan, Jianhong Chen, and Ping Ao. 2015. “Work relations connecting nonequilibrium steady states without detailed balance.” Phys. Rev. E, 91, 4, Pp. 042108. physreve.91.pdf
2014
Ying Tang, Ruoshi Yuan, Jianhong Chen, and Ping Ao. 2014. “Controlling symmetry-breaking states by a hidden quantity in multiplicative noise.” Phys. Rev. E, 90, 5, Pp. 052121. physreve.90.pdf
Ruoshi Yuan, Yi-An Ma, Bo Yuan, and Ping Ao. 2014. “Lyapunov function as potential function: A dynamical equivalence.” Chin. Phys. B, 23, 1, Pp. 010505. cpb.pdf
Ying Tang, Ruoshi Yuan, and Ping Ao. 2014. “Nonequilibrium work relation beyond the Boltzmann-Gibbs distribution.” Phys. Rev. E, 89, 6, Pp. 062112. physreve.89.pdf
Yian Ma, Qijun Tan, Ruoshi Yuan, Bo Yuan, and Ping Ao. 2014. “Potential function in a continuous dissipative chaotic system: decomposition scheme and role of strange attractor.” Int. J. Bifurcat. Chaos, 24, 02, Pp. 1450015. ijbc.pdf
Ying Tang, Ruoshi Yuan, and Ping Ao. 2014. “Summing over trajectories of stochastic dynamics with multiplicative noise.” J. Chem. Phys., 141, 4, Pp. 044125. jcp.pdf
Jie Hu, Xiaomei Zhu, Xinan Wang, Ruoshi Yuan, Wei Zheng, Minjuan Xu, and Ping Ao. 2014. “Two programmed replicative lifespans of Saccharomyces cerevisiae formed by the endogenous molecular-cellular network.” J. Theor. Biol., 362, Pp. 69–74. jtb.pdf
2013
Ying Tang*, Ruoshi Yuan*, and Yian Ma. 2013. “Dynamical behaviors determined by the Lyapunov function in competitive Lotka-Volterra systems.” Phys. Rev. E, 87, 1, Pp. 012708. physreve.87.012708.pdf

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