@inbook {344581,
	title = {Bayesian nonparametric learning of switching dynamics in cohort physiological time series: application in critical care patient monitoring},
	booktitle = {Advanced State Space Methods for Neural and Clinical Data},
	year = {2015},
	pages = {257},
	publisher = {Cambridge University Press},
	organization = {Cambridge University Press},
	url = {https://books.google.co.in/books?hl=en\&lr=\&id=1Z2NCgAAQBAJ\&oi=fnd\&pg=PA257\&dq=11+Bayesian+nonparametric+learning+of+switching+dynamics+in+cohort+physiological+time+series:+application+in+critical+care+patient+monitoring\&ots=mCrTCpd7jc\&sig=HayUjOcm8jq9xqPz},
	author = {Li-wei Lehman and Matthew J. Johnson and Nemati, Shamim and Ryan P. Adams and Roger G. Mark}
}
@conference {344601,
	title = {A Cascaded Regression Approach for Precision Medication Dosing},
	booktitle = { NIH-IEEE 2015 Strategic Conference on Healthcare Innovations and Point-of-Care Technologies for Precision Medicine},
	year = {2015},
	month = {November 10, 201},
	address = {Bethesda, MD},
	author = {Mohammad M. Ghassemi and Roger Mark and Nemati, Shamim}
}
@inbook {344591,
	title = {Identifying outcome-discriminative dynamics in multivariate physiological cohort time series},
	booktitle = {Advanced State Space Methods for Neural and Clinical Data},
	year = {2015},
	pages = {283},
	publisher = {Cambridge University Press},
	organization = {Cambridge University Press},
	url = {https://books.google.com/books?hl=en\&lr=\&id=1Z2NCgAAQBAJ\&oi=fnd\&pg=PA283\&dq=Identifying+outcome-discriminative+dynamics+in+multivariate+physiological+cohort+time+series\&ots=mCrTCpe6g8\&sig=W6au2c5pTp09oBmKU_M1CmFtTZ4$\#$v=onepage\&q=Identifying\%20outcome-discr},
	author = {Nemati, Shamim and Ryan P. Adams}
}
@article {276241,
	title = {Machine Learning and Decision Support in Critical Care},
	journal = {IEEE Transactions on Biomedical Engineering},
	number = {Review Article --Submitted},
	year = {2015},
	author = {Alistair E. W. Johnson and Mohammad M. Ghassemi and Nemati, Shamim and Katherine E. Niehaus and David Clifton and Clifford, Gari D}
}
@conference {276226,
	title = {Patient Prognosis from Vital Sign Time Series: Combining Convolutional Neural Networks with a Dynamical Systems Approach},
	booktitle = {In Computing in Cardiology Conference (Cinc)},
	year = {2015},
	month = {2015},
	address = {Nice, France},
	author = {Li-wei Lehman and Mohammad M. Ghassemi and Jasper Snoek and Nemati, Shamim}
}
@article {oster2015semi,
	title = {Semi-supervised ECG Ventricular Beat Classification with Novelty Detection Based on Switching Kalman Filters},
	journal = {IEEE Transactions on Biomedical Engineering},
	number = {99},
	year = {2015},
	publisher = {IEEE},
	url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7038137},
	author = {Oster, Julien and Behar, Joachim and Sayadi, Omid and Nemati, Shamim and Johnson, A and Clifford, Gari}
}
@conference {276221,
	title = {Visualizing Evolving Clinical Sentiment Using Vector Representations of Clinical Notes and distributed stochastic neighbor embedding},
	booktitle = {Computing in Cardiology Conference (CinC)},
	year = {2015},
	month = {6-9 Sept.},
	address = {Nice, France},
	author = {Ghassemi, Mohammad M and Mark, Roger G and Nemati, Shamim}
}
@article {shaw2014accumulated,
	title = {Accumulated deep sleep is a powerful predictor of LH pulse onset in pubertal children},
	journal = {The Journal of Clinical Endocrinology \& Metabolism},
	volume = {100},
	year = {2014},
	pages = {1062{\textendash}1070},
	publisher = {Endocrine Society Chevy Chase, MD},
	author = {Shaw, ND and Butler, J. P. and Nemati, S and Kangarloo, T and Ghassemi, M and Malhotra, A and Hall, JE}
}
@conference {nemati2014fast,
	title = {A fast and memory-efficient algorithm for learning and retrieval of phenotypic dynamics in multivariate cohort time series},
	booktitle = {Big Data (Big Data), 2014 IEEE International Conference on},
	year = {2014},
	pages = {41{\textendash}44},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Nemati, Shamim and Ghassemi, Mohammad M}
}
@proceedings {223036,
	title = {Supervised Learning in Dynamic Bayesian Networks},
	journal = {Neural Information Processing Systems (NIPS) Workshop on Deep Learning and Representation Learning},
	year = {2014},
	address = {Montreal, Canada},
	url = {http://www.dlworkshop.org/accepted-papers},
	author = {Nemati, S and Adams, RP}
}
@article {189611,
	title = {Quantifying the Ventilatory Control Contribution to Sleep Apnoea Using Polysomnography},
	journal = {European Respiratory Journal},
	year = {2014},
	author = {Terrill, PI and Edwards, BA and Nemati, S and Butler, J. P. and Owens, RL and Eckert, DJ and White, DP and Malhotra, A and Wellman, A and Sands, SA}
}
@article {gederi2014model,
	title = {Model-based characterization of ventilatory stability using spontaneous breathing: A human study},
	journal = {J Respiratory physiology \& neurobiology},
	year = {2014},
	author = {Gederi, E. and Nemati, S and Edwards, BA and Clifford, GD and Malhotra, A and Wellman, A}
}
@article {lehman2014physiological,
	title = {A Physiological Time Series Dynamics-Based Approach to Patient Monitoring and Outcome Prediction},
	journal = {J Biomedical and Health Informatics},
	year = {2014},
	pages = {1{\textendash}1},
	publisher = {IEEE},
	author = {Lehman, L and Adams, R and Mayaud, L and Moody, G and Malhotra, A and Mark, R and Nemati, S}
}
@conference {nemati2014probabilistic,
	title = {A Probabilistic Modeling Approach for Uncovering Neural Population Rotational Dynamics},
	booktitle = {Cosyne},
	year = {2014},
	author = {Nemati, S and Linderman, S W and Chen, Z.}
}
@magazinearticle {nemati2014data,
	title = {Data-Driven Phenotyping: graphical models for model-based phenotyping of sleep apnea},
	journal = {IEEE Pulse},
	volume = {5},
	year = {2014},
	pages = {45-48},
	author = {Nemati, S and Orr, J and Malhotra, A}
}
@conference {ghassemi2014global,
	title = {Global Optimization Approaches for Parameter Tuning in Biomedical Signal Processing: A Focus of Multi-scale Entropy},
	booktitle = {Computers in Cardiology},
	year = {2014},
	author = {Ghassemi, M and Lehman, LH and Snoek, J and Nemati, S}
}
@article {edwards2013quantifying,
	title = {Quantifying Ventilatory Instability Using Clinical Polysomnography In Obstructive Sleep Apnea},
	journal = {Am J Respir Crit Care Med},
	volume = {187},
	year = {2013},
	pages = {A3761},
	author = {Edwards, BA and Nemati, S and Butler, J. P. and Owens, RL and White, DP and Malhotra, A and Wellman, A and Sands, SA and Terrill, P}
}
@conference {lehman2013tracking,
	title = {Tracking progression of patient state of health in critical care using inferred shared dynamics in physiological time series},
	booktitle = {Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE},
	year = {2013},
	pages = {7072{\textendash}7075},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Lehman, Li-wei H and Nemati, Shamim and Adams, Ryan P and Moody, George and Malhotra, Atul and Mark, Roger G}
}
@article {wellman2013simplified,
	title = {A simplified method for determining phenotypic traits in patients with obstructive sleep apnea},
	journal = {Journal of Applied Physiology},
	volume = {114},
	year = {2013},
	pages = {911{\textendash}922},
	publisher = {American Physiological Society},
	author = {Wellman, Andrew and Edwards, Bradley A and Sands, Scott A and Owens, Robert L and Nemati, Shamim and Butler, James and Passaglia, Chris L and Jackson, Andrew C and Malhotra, Atul and White, David P}
}
@mastersthesis {nemati2013identifying,
	title = {Identifying evolving multivariate dynamics in individual and cohort time series, with application to physiological control systems},
	year = {2013},
	school = {Massachusetts Institute of Technology},
	type = {phd},
	url = {http://dspace.mit.edu/handle/1721.1/79223},
	author = {Nemati, Shamim}
}
@conference {nemati2013learning,
	title = {Learning Outcome-Discriminative Dynamics in Multivariate Physiological Cohort Time Series},
	booktitle = {Conf Proc IEEE Eng Med Biol Soc.},
	year = {2013},
	pages = {7104{\textendash}7107},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Nemati, S and Lehman, L and Adams, RP}
}
@conference {terrill2013model,
	title = {Model-based quantification of loop gain using clinical polysomnography in patients with obstructive sleep apnea},
	booktitle = {Conf Proc IEEE Eng Med Biol Soc.},
	year = {2013},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Terrill, PI and Edwards, BA and Wellman, A and Nemati, S and Owens, RL and Butler, J. P. and Malhotra, A and Sands, SA}
}
@article {nemati2013respiration,
	title = {Respiration and heart rate complexity: effects of age and gender assessed by band-limited transfer entropy},
	journal = {Respiratory physiology \& neurobiology},
	volume = {189},
	year = {2013},
	pages = {27{\textendash}33},
	publisher = {Elsevier},
	author = {Nemati, S and Edwards, BA and Joon Lee and Pittman-Polletta, B and Butler, J. P. and Malhotra, A}
}
@article {nemati2012characterizing,
	title = {Characterizing Ventilatory Oscillations Emerging From Disturbances To Stable Control Systems: A Mechanism Of Mild-Moderate Central Sleep Apnea},
	journal = {Am J Respir Crit Care Med},
	volume = {185},
	year = {2012},
	pages = {A3613},
	author = {Nemati, S and Mebrate, Y and Edwards, BA and Manisty, C and Wellman, A and Willson, K and Francis, DP and Malhotra, A and Sands, SA}
}
@article {edwards2012clinically,
	title = {A Clinically Feasible Method For Phenotyping Patients With Obstructive Sleep Apnea},
	journal = {Am J Respir Crit Care Med},
	volume = {185},
	year = {2012},
	pages = {A2436},
	author = {Edwards, BA and Owens, RL and Sands, SA and Nemati, S and Butler, J and Malhotra, A and White, DP and Wellman, A}
}
@article {edwards2012frequency,
	title = {Frequency-Based Assessment Of Ventilatory Chemoreflex Stability Using Inspired Carbon Dioxide},
	journal = {Am J Respir Crit Care Med},
	volume = {185},
	year = {2012},
	pages = {A2434},
	author = {Edwards, BA and Nemati, S and Butler, J and Wellman, A and Malhotra, A and Sands, SA}
}
@article {wellman2012model,
	title = {Model-Based Characterization Of Ventilatory Stability During Spontaneous Breathing: A Human Study},
	journal = {Am J Respir Crit Care Med},
	volume = {185},
	year = {2012},
	pages = {A3609},
	author = {Wellman, A and Edwards, BA and Sands, SA and Malhotra, A and Nemati, S}
}
@conference {sands2012ventilatory,
	title = {VENTILATORY OSCILLATIONS IN STABLE CONTROL SYSTEMS AS AN INTERACTION BETWEEN EXTERNAL DISTURBANCES AND FEEDBACK STABILITY},
	booktitle = {SLEEP},
	volume = {35},
	year = {2012},
	pages = {A48{\textendash}A48},
	publisher = {AMER ACAD SLEEP MEDICINE ONE WESTBROOK CORPORATE CTR, STE 920, WESTCHESTER, IL 60154 USA},
	organization = {AMER ACAD SLEEP MEDICINE ONE WESTBROOK CORPORATE CTR, STE 920, WESTCHESTER, IL 60154 USA},
	author = {Sands, SA and Nemati, S and Mebrate, Y and Edwards, BA and Manisty, C and Wellman, A and Willson, K and Francis, DP and Malhotra, A}
}
@conference {lehman2012discovering,
	title = {Discovering shared dynamics in physiological signals: Application to patient monitoring in ICU},
	booktitle = {Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE},
	year = {2012},
	pages = {5939{\textendash}5942},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Lehman, Li-wei H and Nemati, Shamim and Adams, Ryan Prescott and Mark, Roger Greenwood}
}
@article {lee2012transfer,
	title = {Transfer entropy estimation and directional coupling change detection in biomedical time series},
	journal = {Biomedical engineering online},
	volume = {11},
	year = {2012},
	pages = {1{\textendash}17},
	publisher = {BioMed Central},
	author = {Joon Lee and Nemati, Shamim and Silva, Ikaro and Edwards, Bradley A and Butler, James P and Malhotra, Atul}
}
@conference {nemati2012discovering,
	title = {Discovering shared cardiovascular dynamics within a patient cohort},
	booktitle = {Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE},
	year = {2012},
	pages = {6526{\textendash}6529},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Nemati, S and Lehman, LH and Adams, RP and Malhotra, A}
}
@article {sands2011use,
	title = {The Use Of Diaphragm Activity To Measure The Stability Of The Ventilatory Control System (loop Gain) In Obstructive Sleep Apnea: A Validation Study},
	journal = {Am J Respir Crit Care Med},
	volume = {183},
	year = {2011},
	pages = {A5275},
	author = {Sands, SA and Owens, RL and Eckert, DJ and Loring, SH and Butler, J and Nemati, S and White, DP and Malhotra, A and Edwards, ABA}
}
@conference {wellman2011relationship,
	title = {RELATIONSHIP BETWEEN THE UPPER AIRWAY RESPONSE TO LOADING IN NREM SLEEP AND APNEA SEVERITY IN REM SLEEP},
	booktitle = {SLEEP},
	volume = {34},
	year = {2011},
	pages = {A159{\textendash}A160},
	publisher = {AMER ACAD SLEEP MEDICINE ONE WESTBROOK CORPORATE CTR, STE 920, WESTCHESTER, IL 60154 USA},
	organization = {AMER ACAD SLEEP MEDICINE ONE WESTBROOK CORPORATE CTR, STE 920, WESTCHESTER, IL 60154 USA},
	author = {Wellman, A and Eckert, DJ and Jordan, AS and Edwards, BA and Owens, RL and Sands, SS and Nemati, S and Butler, J and Malhotra, A and White, DP}
}
@article {nemati2011nonparametric,
	title = {Nonparametric, nonstationary noise rejection in T-wave alternans analysis reveals unusual dynamics},
	journal = {Journal of Electrocardiology},
	volume = {44},
	year = {2011},
	pages = {e4{\textendash}e5},
	publisher = {Churchill Livingstone},
	author = {Nemati, Shamim and Malhotra, Atul and Clifford, Gari}
}
@article {nemati2011model,
	title = {Model-based characterization of ventilatory stability using spontaneous breathing},
	journal = {Journal of Applied Physiology},
	volume = {111},
	year = {2011},
	pages = {55{\textendash}67},
	publisher = {Am Physiological Soc},
	author = {Nemati, Shamim and Edwards, Bradley A and Sands, Scott A and Berger, Philip J and Wellman, Andrew and Verghese, George C and Malhotra, Atul and Butler, James P}
}
@article {nemati2011nonparametric,
	title = {A nonparametric surrogate-based test of significance for T-wave alternans detection},
	journal = {Biomedical Engineering, IEEE Transactions on},
	volume = {58},
	year = {2011},
	pages = {1356{\textendash}1364},
	publisher = {IEEE},
	author = {Nemati, Shamim and Abdala, Omar and Monasterio, Violeta and Yim-Yeh, Susie and Malhotra, Atul and Clifford, Gari D}
}
@article {nemati2011t,
	title = {T-wave alternans patterns during sleep in healthy, cardiac disease, and sleep apnea patients},
	journal = {Journal of electrocardiology},
	volume = {44},
	year = {2011},
	pages = {126{\textendash}130},
	publisher = {Churchill Livingstone},
	author = {Nemati, Shamim and Malhotra, Atul and Clifford, Gari D}
}
@article {shamim2010data,
	title = {Data fusion for improved respiration rate estimation},
	journal = {EURASIP journal on advances in signal processing},
	volume = {2010},
	year = {2010},
	publisher = {Hindawi Publishing Corporation},
	author = {Shamim, Nemati and Atul, Malhotra and Gari D, Clifford and others}
}
@article {clifford2010artificial,
	title = {An artificial vector model for generating abnormal electrocardiographic rhythms},
	journal = {Physiological measurement},
	volume = {31},
	year = {2010},
	pages = {595},
	publisher = {IOP Publishing},
	author = {Clifford, Gari D and Nemati, Shamim and Sameni, Reza}
}
@article {yeary2009support,
	title = {A support-vector-machine-based approach to RF sensor spectral signature classifications},
	journal = {Instrumentation and Measurement, IEEE Transactions on},
	volume = {58},
	year = {2009},
	pages = {221{\textendash}228},
	publisher = {IEEE},
	author = {Yeary, Mark B and Nemati, Shamim and Yu, Tian-You and Wang, Yadong and Zhai, Yan}
}
@conference {clifford2008artificial,
	title = {An artificial multi-channel model for generating abnormal electrocardiographic rhythms},
	booktitle = {Computers in Cardiology, 2008},
	year = {2008},
	pages = {773{\textendash}776},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Clifford, GD and Nemati, S and Sameni, R}
}
@conference {khaustov2008open,
	title = {An open-source standard T-wave alternans detector for benchmarking},
	booktitle = {Computers in Cardiology, 2008},
	year = {2008},
	pages = {509{\textendash}512},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Khaustov, A and Nemati, S and Clifford, GD}
}
@article {wang2008tornado,
	title = {Tornado detection using a neuro-fuzzy system to integrate shear and spectral signatures},
	journal = {Journal of Atmospheric and Oceanic Technology},
	volume = {25},
	year = {2008},
	pages = {1136{\textendash}1148},
	author = {Wang, Yadong and Yu, Tian-You and Yeary, Mark and Shapiro, Alan and Nemati, Shamim and Foster, Michael and Andra Jr, David L and Jain, Michael}
}
@conference {zhai2007workshop,
	title = {Workshop on Signal Processing Applications for Public Security and Forensics},
	booktitle = {Signal Processing Applications for Public Security and Forensics, 2007. SAFE {\textquoteright}07. IEEE Workshop on},
	year = {2007},
	pages = {ii{\textendash}v},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Zhai, Yan and Yeary, Mark and Havlicek, Joseph and Nemati, Shamim and Chaudhari, Jayashri and Sen-ching, S Cheung and Venkatesh, M Vijay and Grezl, Frantisˇek and Schwarz, Petr and Glembek, Ondˇrej and others}
}
@conference {nemati2007constructing,
	title = {Constructing robust neural decoders using limited training data},
	booktitle = {IEEE TRANSACTIONS IN BIOMEDICAL ENGINEERING},
	year = {2007},
	author = {Nemati, Shamim and Hatsopoulos, Nicholas G and Miller, Lee E and Fagg, Andrew H}
}
@conference {zhai2007enhanced,
	title = {Enhanced video surveillance using a multiple model particle filter},
	booktitle = {Signal Processing Applications for Public Security and Forensics, 2007. SAFE{\textquoteright}07. IEEE Workshop on},
	year = {2007},
	pages = {1{\textendash}4},
	publisher = {IET},
	organization = {IET},
	author = {Zhai, Yan and Yeary, Mark and Nemati, Shamim}
}
@mastersthesis {nemati2007fractional,
	title = {Fractional Fourier Transforms and Feature Vector Design with Applications to Stochastic Signal Pattern Recognition},
	year = {2007},
	school = {University of Oklahoma},
	type = {phd},
	author = {Nemati, Shamim}
}
@article {wang2007novel,
	title = {A novel approach of tornado detection using a machine intelligence system based on shear and spectral signatures},
	journal = {33rd Conference on Radar Meteorology},
	year = {2007},
	author = {Wang, Yadong and Yu, Tian-You and Yeary, Mark and Shapiro, Alan and Nemati, Shamim and Foster, Michael and Andra Jr, David L and Jain, Michael}
}
@conference {nemati2007spectral,
	title = {Spectral Signature Classification Using A Support Vector Classifier For Real-Time Instrumentation},
	booktitle = {Instrumentation and Measurement Technology Conference Proceedings, 2007. IMTC 2007. IEEE},
	year = {2007},
	pages = {1{\textendash}4},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Nemati, S and Yeary, M and Yu, T-Y and Wang, Y. and Zhai, Y and Fagg, AH}
}
@article {fagg2007biomimetic,
	title = {Biomimetic brain machine interfaces for the control of movement},
	journal = {The Journal of Neuroscience},
	volume = {27},
	year = {2007},
	pages = {11842{\textendash}11846},
	publisher = {Society for Neuroscience},
	author = {Fagg, Andrew H and Hatsopoulos, Nicholas G and de Lafuente, Victor and Moxon, Karen A and Nemati, Shamim and Rebesco, James M and Romo, Ranulfo and Solla, Sara A and Reimer, Jake and Tkach, Dennis and others}
}
@article {yeary2007tornadic,
	title = {Tornadic time-series detection using Eigen analysis and a machine intelligence-based approach},
	journal = {Geoscience and Remote Sensing Letters, IEEE},
	volume = {4},
	year = {2007},
	pages = {335{\textendash}339},
	publisher = {IEEE},
	author = {Yeary, M and Nemati, S and Yu, T-Y and Wang, Y.}
}
@article {yeary2006spectral,
	title = {Spectral signature calculations and target tracking for remote sensing},
	journal = {Instrumentation and Measurement, IEEE Transactions on},
	volume = {55},
	year = {2006},
	pages = {1430{\textendash}1442},
	publisher = {IEEE},
	author = {Yeary, Mark B and Zhai, Yan and Yu, Tian-You and Nematifar, Shamim and Shapiro, Alan}
}
@conference {ozaydin2006orthogonal,
	title = {Orthogonal projections and discrete fractional Fourier transforms},
	booktitle = {Digital Signal Processing Workshop, 12th-Signal Processing Education Workshop, 4th},
	year = {2006},
	pages = {429{\textendash}433},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Ozaydin, M and Nemati, S and Yeary, M and DeBrunner, V}
}
@article {wang2006tornado,
	title = {Tornado identification using a neuro-fuzzy approach to integrate shear and spectral signatures},
	journal = {AMS Severe Local Storms Conference},
	year = {2006},
	author = {Wang, Yadong and Yu, TY and Yeary, M and A. Shapiro and Nemati, S and Foster, M and Andra, D}
}
@conference {zhai2006visual,
	title = {Visual target tracking using improved and computationally efficient particle filtering},
	booktitle = {Image Processing, 2006 IEEE International Conference on},
	year = {2006},
	pages = {1757{\textendash}1760},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Zhai, Yan and Yeary, M and Noyer, Jean-Charles and Havlicek, J and Nemati, Shamim and Lanvin, Patrick}
}
@conference {yeary2005spectral,
	title = {Spectral signature calculations for remote sensing},
	booktitle = {Instrumentation and Measurement Technology Conference, 2005. IMTC 2005. Proceedings of the IEEE},
	volume = {3},
	year = {2005},
	pages = {2071{\textendash}2075},
	publisher = {IEEE},
	organization = {IEEE},
	author = {Yeary, M and Yu, T-Y and Nematifar, S and A. Shapiro}
}
@article {place20042004,
	title = {2004 Regional Student Paper Contest Results},
	journal = {IEEE Trans},
	volume = {17},
	year = {2004},
	author = {Place, First}
}
