Software

  • CLIME: a statistical method that estimates the loss/gain evolutionary history of human genes and cluster genes by virtue of shared evolutionary under a mixture of tree-structured hidden Markov models (tHMM).
    [Reference]
     
  • CLIC: a Bayesian statistical algorithm that expands an input functional gene set with addition genes sharing a similar co-expression pattern across many transcriptomic datasets with assigned weights.  
    [Reference]
     
  • SODA: a forward-screening-backward-elimination procedure that conducts variable selection with both main and quadratic interaction terms for logistic regression and quadratic discriminant analysis.
    [Reference]
     
  • PACOan efficient method to implement the EM algorithm in delay tomography analysis for multicast networks. PACO is based on the dynamic programming and “pattern-collapsing” schemes to avoid redundant computations in the E-step. 
    [Reference]
  • LossTomoan efficient method that estimates link-level loss probabilities of network packets, which is based on a re-parametrization of the likelihood function to the standard exponential family.
    [Reference]